RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 FAM129AQ9BZQ8 928 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 CCDC113Q9H0I3 377 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 IKZF4Q9H2S9 585 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 NOD2Q9HC29 1040 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 AMFRQ9UKV5 643 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 BZW2Q9Y6E2 419 aaKnown RBP14.87□□□□□ -0.03
USP49-201ENST00000373006 ROBO3Q96MS0 1386 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 EME2A4GXA9 379 aaPredicted RBP14.87□□□□□ -0.03
USP49-201ENST00000373006 PPP1R12AO14974 1030 aaPredicted RBP14.87□□□□□ -0.03
USP49-201ENST00000373006 ATP6V1G2O95670 118 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 PSMC6P62333 389 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 DR1Q01658 176 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 TTBK2Q6IQ55 1244 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 C16orf86Q6ZW13 317 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 TEX11Q8IYF3 940 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 LINC00116Q8NCU8 138 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 SLC35G2Q8TBE7 412 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 SPDL1Q96EA4 605 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 NGLY1Q96IV0 654 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 PRMT1Q99873 361 aaKnown RBP14.87□□□□□ -0.03
USP49-201ENST00000373006 AZI2Q9H6S1 392 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 SCN7AQ01118 1682 aa14.87□□□□□ -0.03
USP49-201ENST00000373006 PPP1R11O60927 126 aaPredicted RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 VIMP08670 466 aaKnown RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 POU5F1Q01860 360 aaKnown RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 SLC29A2Q14542 456 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 SEPT2Q15019 361 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 DCAF12L1Q5VU92 463 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 FOXR2Q6PJQ5 311 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 SLFN11Q7Z7L1 901 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 ZBTB10Q96DT7 871 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 HES6Q96HZ4 224 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 ZNF317Q96PQ6 595 aaPredicted RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.86□□□□□ -0.036e-8■■■■■ 29.1
USP49-201ENST00000373006 L3MBTL1Q9Y468 752 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 PCDHB13Q9Y5F0 798 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L15C9J2P7 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L13C9JLJ4 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L11C9JVI0 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L18D6R9N7 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L22D6RA61 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L17D6RBQ6 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L19D6RCP7 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L20D6RJB6 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 PPFIA2O75334 1257 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 MED24O75448 989 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 KCNA1Q09470 495 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L24Q0WX57 530 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 PABPC4Q13310 644 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP49-201ENST00000373006 USP17L6PQ6QN14 398 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 VPS36Q86VN1 386 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 FBXO25Q8TCJ0 367 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 MICAL1Q8TDZ2 1067 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 RNF25Q96BH1 459 aaPredicted RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 NT5C3AQ9H0P0 336 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 EPB41L4BQ9H329 900 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 CNOT10Q9H9A5 744 aaKnown RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 GCNT4Q9P109 453 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 MYH14Q7Z406 1995 aaKnown RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 SNED1Q8TER0 1413 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 COL22A1Q8NFW1 1626 aaPredicted RBP14.86□□□□□ -0.03
USP49-201ENST00000373006 CCDC88AQ3V6T2 1871 aa14.86□□□□□ -0.03
USP49-201ENST00000373006 AP1G2O75843 785 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 RFC4P35249 363 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 PMS2P54278 862 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 CCDC38Q502W7 563 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 ANKS4BQ8N8V4 417 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 WDR66Q8TBY9 1149 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SEC14L1Q92503 715 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 FAXDC2Q96IV6 333 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SEPT11Q9NVA2 429 aaKnown RBP14.85□□□□□ -0.03
USP49-201ENST00000373006 TMOD4Q9NZQ9 345 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 DAAM1Q9Y4D1 1078 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 CD2APQ9Y5K6 639 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 PHLPP1O60346 1717 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 DNAJC8O75937 253 aaPredicted RBP14.85□□□□□ -0.03
USP49-201ENST00000373006 KRT13P13646 458 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 GCFC2P16383 781 aaKnown RBP14.85□□□□□ -0.03
USP49-201ENST00000373006 HOXD13P35453 343 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 CLEC4GQ6UXB4 293 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SFR1Q86XK3 245 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 CCDC63Q8NA47 563 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 STAMBPL1Q96FJ0 436 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 IGSF9BQ9UPX0 1349 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 A0A1B0GUA9 196 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 UBAP1LF5GYI3 381 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SLC8A1P32418 973 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 EPHA7Q15375 998 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 EDRF1Q3B7T1 1238 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 ADGRF4Q8IZF3 695 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SYCE1Q8N0S2 351 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 LNX1Q8TBB1 728 aaPredicted RBP14.85□□□□□ -0.03
USP49-201ENST00000373006 ERP44Q9BS26 406 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 ADAM7Q9H2U9 754 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SEMA4AQ9H3S1 761 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 JMJD4Q9H9V9 463 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 SIX2Q9NPC8 291 aa14.85□□□□□ -0.03
USP49-201ENST00000373006 RGS16O15492 202 aaPredicted RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 EIF3BP55884 814 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 MYO1EQ12965 1108 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms