RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 TEKT4Q8WW24 435 aa9.55□□□□□ -0.88
SYNE1-209ENST00000367257 ZNF496Q96IT1 587 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-209ENST00000367257 PPP1R2P1Q96PQ5 205 aa9.55□□□□□ -0.88
SYNE1-209ENST00000367257 FAM193BQ96PV7 902 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-209ENST00000367257 BRIP1Q9BX63 1249 aa9.55□□□□□ -0.88
SYNE1-209ENST00000367257 TRPV6Q9H1D0 765 aa9.55□□□□□ -0.88
SYNE1-209ENST00000367257 SUN2Q9UH99 717 aa9.55□□□□□ -0.88
SYNE1-209ENST00000367257 PCDHA1Q9Y5I3 950 aa9.55□□□□□ -0.88
SYNE1-209ENST00000367257 GOLGA8TH3BQL2 631 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 HNRNPDLO14979 420 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ASAP2O43150 1006 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 GOLGA8HP0CJ92 632 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 KLC1Q07866 573 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 DHX34Q14147 1143 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ACAD11Q709F0 780 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 DDX56Q9NY93 547 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 LMTK3Q96Q04 1460 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 DDX39AO00148 427 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 PRPSAP2O60256 369 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 CCDC22O60826 627 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ZRANB2O95218 330 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 GNAT1P11488 350 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 NEK2P51955 445 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 MAP3K10Q02779 954 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ABCB5Q2M3G0 1257 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 Q4G0T1 1027 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 NUDCD3Q8IVD9 361 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 PPWD1Q96BP3 646 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 TIPINQ9BVW5 301 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 MOV10L1Q9BXT6 1211 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 SNX25Q9H3E2 840 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 UNC45AQ9H3U1 944 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 KMT5AQ9NQR1 393 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 KIAA1024Q9UPX6 916 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 POC1B-GALNT4F8VUJ3 575 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 HNRNPRO43390 633 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 SASH1O94885 1247 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 CTCFP49711 727 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 SNX1Q13596 522 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 TMED2Q15363 201 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 TRADDQ15628 312 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ZNF594Q96JF6 807 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 EMILIN3Q9NT22 766 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 TECPR2O15040 1411 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 IGSF1Q8N6C5 1336 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 LGALS16A8MUM7 142 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 FDX1P10109 184 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 YY1P25490 414 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ADD1P35611 737 aaKnown RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 BTDP43251 543 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 PLTPP55058 493 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 LRIG3Q6UXM1 1119 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ANO5Q75V66 913 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 DCAF4Q8WV16 495 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 TUBA8Q9NY65 449 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-209ENST00000367257 ATP8A1Q9Y2Q0 1164 aa9.54□□□□□ -0.88
SYNE1-209ENST00000367257 BBOX1O75936 387 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 PSAPP07602 524 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 TBXAS1P24557 533 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 OLFML2BQ68BL8 750 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 ANKARQ7Z5J8 1434 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 OR9Q1Q8NGQ5 310 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 HIC2Q96JB3 615 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 MMS19Q96T76 1030 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 SLC38A10Q9HBR0 1119 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 CD248Q9HCU0 757 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 BTG4Q9NY30 223 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 GCNT4Q9P109 453 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 MKL2Q9ULH7 1088 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 RGPD8O14715 1765 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 TESPA1A2RU30 521 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 CCDC159P0C7I6 412 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 SRGAP2CP0DJJ0 459 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 AP2B1P63010 937 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 PDCLQ13371 301 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 KIF22Q14807 665 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 BSPRYQ5W0U4 402 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 RNF207Q6ZRF8 634 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 SNRNP27Q8WVK2 155 aaKnown RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 CEP19Q96LK0 163 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 POLR3CQ9BUI4 534 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 TEKT2Q9UIF3 430 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 SLC8A2Q9UPR5 921 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 ZNF521Q96K83 1311 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 A0A1B0GW55 424 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DUX4L2P0CJ85 424 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DUX4L3P0CJ86 424 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DUX4L4P0CJ87 422 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DUX4L5P0CJ88 424 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DUX4L6P0CJ89 424 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DUX4L7P0CJ90 424 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 EIF4A3P38919 411 aaKnown RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 FAM47AQ5JRC9 791 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DARS2Q6PI48 645 aaKnown RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 PACS2Q86VP3 889 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 DNAJC10Q8IXB1 793 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 TRIML2Q8N7C3 387 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 PROCA1Q8NCQ7 364 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-209ENST00000367257 C3orf20Q8ND61 904 aa9.53□□□□□ -0.88
SYNE1-209ENST00000367257 PYROXD1Q8WU10 500 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms