RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 GUCY2CP25092 1073 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HOXC12P31275 282 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 EFNA5P52803 228 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 PDX1P52945 283 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CHRNDQ07001 517 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 LAMB3Q13751 1172 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 KIAA0319Q5VV43 1072 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 KRT40Q6A162 431 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SAMD3Q8N6K7 520 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 PPP4R1Q8TF05 950 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 DYDC1Q8WWB3 177 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 NLRP4Q96MN2 994 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TRERF1Q96PN7 1200 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SLC9A7Q96T83 725 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SELENOOQ9BVL4 669 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SAP130Q9H0E3 1048 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TAF1DQ9H5J8 278 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 ADCY9O60503 1353 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CCDC151A5D8V7 595 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 A6NCN8 305 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 LRRC72A6NJI9 287 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 C1QTNF3-AMACRE9PGA6 284 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SGSM2O43147 1006 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ACTN4O43707 911 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 PPFIA4O75335 1185 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 IGHEP01854 428 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 KRT81Q14533 505 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 THEMIS2Q5TEJ8 643 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TDRD10Q5VZ19 366 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 CHRDL2Q6WN34 429 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SCUBE3Q8IX30 993 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SYTL1Q8IYJ3 562 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CLYBLQ8N0X4 340 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 FAM13CQ8NE31 585 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CD99L2Q8TCZ2 262 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HERVK_113Q902F9 699 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TIGD1Q96MW7 591 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 THUMPD2Q9BTF0 503 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 STK33Q9BYT3 514 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TTYH1Q9H313 450 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 ERAP1Q9NZ08 941 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 PIN4Q9Y237 131 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 COL4A3BPQ9Y5P4 624 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CUL7Q14999 1698 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 FAM205AQ6ZU69 1335 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PSMD12O00232 456 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 HNRNPDLO14979 420 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 PEX14O75381 377 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 APODP05090 189 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MYL4P12829 197 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 JAK1P23458 1154 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 STK3Q13188 491 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 GPM6BQ13491 265 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ARHGAP29Q52LW3 1261 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SCIMPQ6UWF3 145 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PRR23CQ6ZRP0 262 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PRPF39Q86UA1 669 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 TPH2Q8IWU9 490 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 CNPY4Q8N129 248 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 EHBP1Q8NDI1 1231 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SEPT1Q8WYJ6 367 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 APPBP2Q92624 585 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TIFAQ96CG3 184 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 FAM161BQ96MY7 647 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 NEK6Q9HC98 313 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MIS18AQ9NYP9 233 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MAPKBP1O60336 1514 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 EFCAB6Q5THR3 1501 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 KDM6AO15550 1401 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 MOXD2PA6NHM9 499 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 K7ERI5 159 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ALPPP05187 535 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PRKAR2AP13861 404 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 TAS2R50P59544 299 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MFSD4BQ5TF39 518 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 CCDC84Q86UT8 332 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 PGBD1Q96JS3 809 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZKSCAN3Q9BRR0 538 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SPON2Q9BUD6 331 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.41□□□□□ -1.7
USH2A-202ENST00000366942 PRKRIP1Q9H875 184 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 NDUFB5O43674 189 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 GLUD1P00367 558 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 BMP4P12644 408 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PPP2R1AP30153 589 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 CCDC122Q5T0U0 273 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PAOXQ6QHF9 649 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 PAQR7Q86WK9 346 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ANKLE1Q8NAG6 615 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 LEMD2Q8NC56 503 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SMG7Q92540 1137 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZNF274Q96GC6 653 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZNF577Q9BSK1 485 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 C6orf203Q9P0P8 240 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 LRWD1Q9UFC0 647 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TEKT2Q9UIF3 430 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 CNTNAP4Q9C0A0 1308 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3DA0A087WVF3 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3IA0A087WXS9 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3EA0A087X179 549 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms