RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 MKNK1Q9BUB5 465 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 VPS18Q9P253 973 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 RPTORQ8N122 1335 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 PHF20L1A8MW92 1017 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 GUCY2CP25092 1073 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 ODR4Q5SWX8 454 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 CLEC4DQ8WXI8 215 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 CCDC102AQ96A19 550 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 DMAC2Q9NW81 257 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 RNF14Q9UBS8 474 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 HPCAL4Q9UM19 191 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 NFIBO00712 420 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 BCRP11274 1271 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 CFAP221Q4G0U5 840 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 GJB7Q6PEY0 223 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 RUBCNQ92622 972 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 EXOC4Q96A65 974 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 KCNH7Q9NS40 1196 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 NAGPAQ9UK23 515 aa22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 SCAF8Q9UPN6 1271 aaKnown RBP22.77■■□□□ 1.24
CCDC88B-203ENST00000359902 GRID2IPA4D2P6 1211 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 DDX39AO00148 427 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 AARSP49588 968 aaKnown RBP eCLIP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 STXBP4Q6ZWJ1 553 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 PRPF38AQ8NAV1 312 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 FAM71BQ8TC56 605 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 GDAP1L1Q96MZ0 367 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 SELENOOQ9BVL4 669 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 MED4Q9NPJ6 270 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 AGPAT3Q9NRZ7 376 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 RBM12Q9NTZ6 932 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 FAN1Q9Y2M0 1017 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 ZC3H4Q9UPT8 1303 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 ARHGEF35A5YM69 484 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 PPP1R12BO60237 982 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 MAPK7Q13164 816 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 HSP90B2PQ58FF3 399 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 HS2ST1Q7LGA3 356 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 DAW1Q8N136 415 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 IL31RAQ8NI17 732 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 AENQ8WTP8 325 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 STRA6Q9BX79 667 aa22.76■■□□□ 1.23
CCDC88B-203ENST00000359902 MRPS25P82663 173 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 SLC7A5Q01650 507 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 ALKBH5Q6P6C2 394 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 NEK9Q8TD19 979 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 HOOK2Q96ED9 719 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 PSD3Q9NYI0 1048 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 PKD2L1Q9P0L9 805 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 NENFQ9UMX5 172 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 DHX15O43143 795 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 HIP1RO75146 1068 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 ANXA13P27216 316 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 FMO5P49326 533 aa22.75■■□□□ 1.23
CCDC88B-203ENST00000359902 PPP1R37O75864 691 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 RASA3Q14644 834 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 MIER3Q7Z3K6 550 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 MYOZ2Q9NPC6 264 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 PACSIN2Q9UNF0 486 aaPredicted RBP22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 SYF2O95926 243 aaKnown RBP22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 CYP2J2P51589 502 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 PADI6Q6TGC4 694 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 NIPA1Q7RTP0 329 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 FRMD4BQ9Y2L6 1034 aa22.74■■□□□ 1.23
CCDC88B-203ENST00000359902 WDR46O15213 610 aaKnown RBP22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 FLOT1O75955 427 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 DNA2P51530 1060 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 GHRHRQ02643 423 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 DNAAF5Q86Y56 855 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 STIM2Q9P246 746 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 PHACTR2O75167 634 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 P4HBP07237 508 aaKnown RBP22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 TKFCQ3LXA3 575 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 MCF2L2Q86YR7 1114 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 CPXCR1Q8N123 301 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 UBIAD1Q9Y5Z9 338 aa22.73■■□□□ 1.23
CCDC88B-203ENST00000359902 FERP16591 822 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 STAT1P42224 750 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 MRPS9P82933 396 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 ITGB3BPQ13352 177 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 CBWD6Q4V339 395 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 GLE1Q53GS7 698 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 CBWD3Q5JTY5 395 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 CBWD5Q5RIA9 395 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 GOLGA5Q8TBA6 731 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 LPAR1Q92633 364 aa22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 INPP4AQ96PE3 977 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 AGO4Q9HCK5 861 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-203ENST00000359902 DDX3XO00571 662 aaKnown RBP eCLIP22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 GFPT2O94808 682 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 ALAS1P13196 640 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 PPP2R5AQ15172 486 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 PCNX4Q63HM2 1172 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 C8orf74Q6P047 294 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 AEBP2Q6ZN18 517 aaPredicted RBP22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 SLC9A9Q8IVB4 645 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 TEPSINQ96N21 525 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 STK33Q9BYT3 514 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 KIAA1683Q9H0B3 1180 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 RAVER2Q9HCJ3 691 aaKnown RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms