RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 RXRBP28702 533 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 GPC3P51654 580 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 COPS2P61201 443 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 MED21Q13503 144 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 C2orf69Q8N8R5 385 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 GPT2Q8TD30 523 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ASPSCR1Q9BZE9 553 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 QTRT2Q9H974 415 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 GPBP1L1Q9HC44 474 aaPredicted RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 BSDC1Q9NW68 430 aaPredicted RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 PALD1Q9ULE6 856 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 STK36Q9NRP7 1315 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 MEIS1O00470 390 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ZFXP17010 805 aaPredicted RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 HOXD10P28358 340 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 SLC16A2P36021 539 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 FBXW4P57775 412 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 DYNLL1P63167 89 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 TAP1Q03518 808 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 TBC1D9BQ66K14 1250 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 SCARA5Q6ZMJ2 495 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 NUDT18Q6ZVK8 323 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 CDKL3Q8IVW4 592 aaPredicted RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.91□□□□□ -1.3
UPF2-201ENST00000356352 TRIML2Q8N7C3 387 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 OTUB1Q96FW1 271 aaPredicted RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 MASTLQ96GX5 879 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 TSSK1BQ9BXA7 367 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ZWILCHQ9H900 591 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 HACD3Q9P035 362 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 SNX5Q9Y5X3 404 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 SYNMO15061 1565 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 E9PMD0 336 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 CFLARO15519 480 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 FDX1P10109 184 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 MAPRE2Q15555 327 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 MAPK6Q16659 721 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 SLC10A5Q5PT55 438 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 TRMT10CQ7L0Y3 403 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 PATL1Q86TB9 770 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 KIRREL3Q8IZU9 778 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 LCORLQ8N3X6 602 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 TBC1D19Q8N5T2 526 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 TMCO5AQ8N6Q1 288 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 RASGRP4Q8TDF6 673 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ZNF341Q9BYN7 854 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ANLNQ9NQW6 1124 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 RRP15Q9Y3B9 282 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 COBLO75128 1261 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 E2F6O75461 281 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 CACNB1Q02641 598 aaPredicted RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 ZNF699Q32M78 642 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 NAALADL2Q58DX5 795 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ANKS3Q6ZW76 656 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ENOSF1Q7L5Y1 443 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 COA7Q96BR5 231 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 TRIM54Q9BYV2 358 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 DBNDD1Q9H9R9 158 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 ABT1Q9ULW3 272 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 NOVA2Q9UNW9 492 aaKnown RBP6.91□□□□□ -1.3
UPF2-201ENST00000356352 WDR19Q8NEZ3 1342 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 KDM5CP41229 1560 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 NLRP1Q9C000 1473 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 EFCAB6Q5THR3 1501 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 GRID2IPA4D2P6 1211 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 KCNQ3O43525 872 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 CYP21A2P08686 494 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 CDK8P49336 464 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 GPC5P78333 572 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 TMPRSS15P98073 1019 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 RAD51Q06609 339 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 NSUN2Q08J23 767 aaKnown RBP eCLIP6.9□□□□□ -1.3
UPF2-201ENST00000356352 FAM133BQ5BKY9 247 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 ZBTB41Q5SVQ8 909 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 TRIM72Q6ZMU5 477 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 TADA2BQ86TJ2 420 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 STX19Q8N4C7 294 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 ALKBH8Q96BT7 664 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 ULK4Q96C45 1275 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 NLRP4Q96MN2 994 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 YY1AP1Q9H869 796 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 COG4Q9H9E3 785 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 ADAM22Q9P0K1 906 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 IP6K2Q9UHH9 426 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 PTCH1Q13635 1447 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 NCAPD2Q15021 1401 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 CLDN3O15551 220 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 CREB3O43889 395 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 GGPS1O95749 300 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 OSTNP61366 133 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 MAP3K10Q02779 954 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 MTMR1Q13613 665 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 DPCR1Q3MIW9 517 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 ALKBH5Q6P6C2 394 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 ZNF579Q8NAF0 562 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 NAF1Q96HR8 494 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 KDM4CQ9H3R0 1056 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 SAYSD1Q9NPB0 183 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 ABCF3Q9NUQ8 709 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 KIF17Q9P2E2 1029 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms