RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 HMGB1P09429 215 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 UQCRFS1P1P0C7P4 283 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MMP14P50281 582 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 RBM6P78332 1123 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 GHRHRQ02643 423 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 IKBKEQ14164 716 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 KRT32Q14532 448 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 TXNRD1Q16881 649 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 CCDC152Q4G0S7 254 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 METTL24Q5JXM2 366 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 ADALQ6DHV7 355 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 SDE2Q6IQ49 451 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 RPUSD2Q8IZ73 545 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 TAB3Q8N5C8 712 aaPredicted RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 RUFY2Q8WXA3 655 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 KLHL6Q8WZ60 621 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 PHKBQ93100 1093 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 NKD1Q969G9 470 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 LENG9Q96B70 501 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 ZNF669Q96BR6 464 aaPredicted RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 PSMG3-AS1Q96PY0 264 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 SLC9A7Q96T83 725 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MYL10Q9BUA6 226 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MXD3Q9BW11 206 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MRIQ9BWK5 157 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 CCNL1Q9UK58 526 aaPredicted RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 A0A1W2PQH9 124 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MEGF11A6BM72 1044 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 STXBP3O00186 592 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 PRPF3O43395 683 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 STK10O94804 968 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 ALX3O95076 343 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 RPS8P62241 208 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 RING1Q06587 406 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 TTF1Q15361 905 aaPredicted RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 PPP2R5EQ16537 467 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 DDR2Q16832 855 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 CCDC93Q567U6 631 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 DACT2Q5SW24 774 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 CCDC183Q5T5S1 534 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 TDRD10Q5VZ19 366 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 LARP1BQ659C4 914 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 OVOS1Q6IE37 1185 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 CNNM4Q6P4Q7 775 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 TMTC3Q6ZXV5 915 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 RAVER1Q8IY67 606 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 DPF2Q92785 391 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 ACSF2Q96CM8 615 aaPredicted RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 TMEM87BQ96K49 555 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 DEPDC7Q96QD5 511 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MTMR9Q96QG7 549 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 WDR18Q9BV38 432 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 SRRTQ9BXP5 876 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 TTYH3Q9C0H2 523 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 DEFB129Q9H1M3 183 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 RIOX1Q9H6W3 641 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 UPF2Q9HAU5 1272 aaKnown RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 CD209Q9NNX6 404 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 NRBP1Q9UHY1 535 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 TRPC5Q9UL62 973 aaPredicted RBP2.68□□□□□ -1.98
VPS54-202ENST00000354504 PYCARDQ9ULZ3 195 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MAPK8IP1Q9UQF2 711 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 ATP6V0A2Q9Y487 856 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 PCDHB6Q9Y5E3 794 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 PFASO15067 1338 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 MYO3BQ8WXR4 1341 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 COL4A6Q14031 1691 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 FSCN2O14926 492 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 HTR3BO95264 441 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 RXRAP19793 462 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 POU3F3P20264 500 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 NME2P22392 152 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CCT2P78371 535 aaKnown RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 ANKRD1Q15327 319 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 TTC39AQ5SRH9 613 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CDKAL1Q5VV42 579 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 ATL3Q6DD88 541 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 LLGL2Q6P1M3 1020 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 SP8Q8IXZ3 490 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 KIAA1524Q8TCG1 905 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 MIR1-1HGQ9H1L0 117 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 NENFQ9UMX5 172 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 HDAC5Q9UQL6 1122 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 DAGLAQ9Y4D2 1042 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 U3KQE9 123 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 USP27XA6NNY8 438 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CTIFO43310 598 aaKnown RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 YEATS4O95619 227 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 PSMA5P28066 241 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 MCM5P33992 734 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 TXKP42681 527 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 PIP4K2BP78356 416 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 STK3Q13188 491 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 MORC3Q14149 939 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 GRM4Q14833 912 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 SF1Q15637 639 aaKnown RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 LONRF3Q496Y0 759 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 COBLL1Q53SF7 1204 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 KRT40Q6A162 431 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms