RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 EYA4O95677 639 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 GGPS1O95749 300 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 PHBP35232 272 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 PDIA5Q14554 519 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 BRD3Q15059 726 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 TKFCQ3LXA3 575 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 KCNV1Q6PIU1 500 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 AGBL1Q96MI9 1066 aa16.09■□□□□ 0.17
COL17A1-201ENST00000353479 CCL15-CCL14A0A0B4J2E2 113 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 POLRMTO00411 1230 aaKnown RBP16.08■□□□□ 0.17
COL17A1-201ENST00000353479 NR3C2P08235 984 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 HUNKP57058 714 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 CCL15Q16663 113 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 ZNF699Q32M78 642 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 ZBED2Q9BTP6 218 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 TUFT1Q9NNX1 390 aa16.08■□□□□ 0.17
COL17A1-201ENST00000353479 ALKBH5Q6P6C2 394 aaKnown RBP16.08■□□□□ 0.16
COL17A1-201ENST00000353479 RAET1EQ8TD07 263 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 CALN1Q9BXU9 219 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 HGSO14964 777 aaPredicted RBP16.08■□□□□ 0.16
COL17A1-201ENST00000353479 C9orf131Q5VYM1 1079 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 ANKRD13AQ8IZ07 590 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 MGARPQ8TDB4 240 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 MRPL4Q9BYD3 311 aaKnown RBP16.08■□□□□ 0.16
COL17A1-201ENST00000353479 MAD1L1Q9Y6D9 718 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 SH3BP5O60239 455 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 PPFIA1Q13136 1202 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 CEP85LQ5SZL2 805 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 C10orf76Q5T2E6 689 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 PNMA8AQ86V59 439 aaPredicted RBP16.08■□□□□ 0.16
COL17A1-201ENST00000353479 ERICH1Q86X53 443 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 ANKRD42Q8N9B4 389 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 CCNYQ8ND76 341 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 ATG4CQ96DT6 458 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 TYW5A2RUC4 315 aaKnown RBP16.08■□□□□ 0.16
COL17A1-201ENST00000353479 VAMP7P51809 220 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 GIMAP7Q8NHV1 300 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 ZDHHC15Q96MV8 337 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 ZMYND15Q9H091 742 aa16.08■□□□□ 0.16
COL17A1-201ENST00000353479 SPDYE16A6NNV3 312 aaPredicted RBP16.07■□□□□ 0.16
COL17A1-201ENST00000353479 NDUFAB1O14561 156 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 SPDYE2Q495Y8 402 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 SRGAP1Q7Z6B7 1085 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 GCOM2Q9BZD3 368 aaPredicted RBP16.07■□□□□ 0.16
COL17A1-201ENST00000353479 BCL2L12Q9HB09 334 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 NAALADL2Q58DX5 795 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 HAUS6Q7Z4H7 955 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 KCTD6Q8NC69 237 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 ARL4AP40617 200 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 SCYL3Q8IZE3 742 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 SGO2Q562F6 1265 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 GUF1Q8N442 669 aaKnown RBP16.07■□□□□ 0.16
COL17A1-201ENST00000353479 ATP2A3Q93084 1043 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 CEP72Q9P209 647 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 MAD2L2Q9UI95 211 aa16.07■□□□□ 0.16
COL17A1-201ENST00000353479 SF3A3Q12874 501 aaKnown RBP eCLIP16.06■□□□□ 0.16
COL17A1-201ENST00000353479 RTFDC1Q9BY42 306 aaPredicted RBP16.06■□□□□ 0.16
COL17A1-201ENST00000353479 SLC12A6Q9UHW9 1150 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 REREQ9P2R6 1566 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 SPDYE2BA6NHP3 402 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 PRPSAP2O60256 369 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 SPDYE6P0CI01 402 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 NMT1P30419 496 aaKnown RBP16.06■□□□□ 0.16
COL17A1-201ENST00000353479 ELF1P32519 619 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 LRRD1A4D1F6 860 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 FDPSP14324 419 aaKnown RBP16.06■□□□□ 0.16
COL17A1-201ENST00000353479 BIRC2Q13490 618 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 TMEM270Q6UE05 265 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 RNF149Q8NC42 400 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 BBOF1Q8ND07 529 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 MICAL1Q8TDZ2 1067 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 RNF139Q8WU17 664 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 I3L4J1 428 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 ZNF18P17022 549 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 CYP2B6P20813 491 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 ARID5BQ14865 1188 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 CDO1Q16878 200 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 BEST2Q8NFU1 509 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 HPS3Q969F9 1004 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 PGRMC1O00264 195 aaKnown RBP16.06■□□□□ 0.16
COL17A1-201ENST00000353479 DYNC1LI2O43237 492 aaPredicted RBP16.06■□□□□ 0.16
COL17A1-201ENST00000353479 LMNB2Q03252 620 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 ADGRA1Q86SQ6 560 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 PASD1Q8IV76 773 aa16.06■□□□□ 0.16
COL17A1-201ENST00000353479 CETPP11597 493 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 OAS2P29728 719 aaKnown RBP16.05■□□□□ 0.16
COL17A1-201ENST00000353479 CAP2P40123 477 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 PRPSAP1Q14558 356 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 ACER1Q8TDN7 264 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 ZFYVE28Q9HCC9 887 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 LRRC53A6NM62 1247 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 BUB1BO60566 1050 aaPredicted RBP16.05■□□□□ 0.16
COL17A1-201ENST00000353479 HUS1O60921 280 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 CASP7P55210 303 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 C4orf50Q6ZRC1 276 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 VPS52Q8N1B4 723 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 MAP3K14Q99558 947 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 GPBP1L1Q9HC44 474 aaPredicted RBP16.05■□□□□ 0.16
COL17A1-201ENST00000353479 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.05■□□□□ 0.16
COL17A1-201ENST00000353479 HPS5Q9UPZ3 1129 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms