RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 EIF3JO75822 258 aaKnown RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 PPP2R5CQ13362 524 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 IQCEQ6IPM2 695 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 HS2ST1Q7LGA3 356 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 IRF2BP2Q7Z5L9 587 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 ZSWIM2Q8NEG5 633 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 U2AF1L4Q8WU68 220 aaKnown RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 JDP2Q8WYK2 163 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 ELMO3Q96BJ8 720 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 TAAR1Q96RJ0 339 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 NUCKS1Q9H1E3 243 aaKnown RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 EHMT1Q9H9B1 1298 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 TUFT1Q9NNX1 390 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 GPRC5CQ9NQ84 441 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 ZMYM2Q9UBW7 1377 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 MTMR2Q13614 643 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 CBWD6Q4V339 395 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 CBWD3Q5JTY5 395 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 CBWD5Q5RIA9 395 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 WDR93Q6P2C0 686 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 ALKBH5Q6P6C2 394 aaKnown RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 PADI6Q6TGC4 694 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 SND1Q7KZF4 910 aaKnown RBP eCLIP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 ZNF720Q7Z2F6 126 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 FAM160B2Q86V87 743 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 PKNOX2Q96KN3 472 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 TRERF1Q96PN7 1200 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 MXRA8Q9BRK3 442 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 ZNF536O15090 1300 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 TESPA1A2RU30 521 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 TCP1P17987 556 aaKnown RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 ABCB4P21439 1286 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 CIAPIN1Q6FI81 312 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 CCDC70Q6NSX1 233 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 WNK4Q96J92 1243 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 PSMD1Q99460 953 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 SELENOOQ9BVL4 669 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 LUC7LQ9NQ29 371 aaKnown RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 AIPL1Q9NZN9 384 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 PJA2O43164 708 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 GAP43P17677 238 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 PSMC2P35998 433 aaKnown RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 PRKG1Q13976 671 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 NAB2Q15742 525 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 DLK2Q6UY11 383 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 KLHL7Q8IXQ5 586 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 ZC3H3Q8IXZ2 948 aaKnown RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 IFT81Q8WYA0 676 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 TCEAL9Q9UHQ7 104 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 GRID2IPA4D2P6 1211 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 GOLGA8IPA6NC78 632 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 GOLGA8JA6NMD2 632 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 KCNK3O14649 394 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 TUBB4BP68371 445 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 ITGB3BPQ13352 177 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-201ENST00000341247 PLA2G4FQ68DD2 849 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 FOXR2Q6PJQ5 311 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 SIX2Q9NPC8 291 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 OLFML3Q9NRN5 406 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 AGPAT3Q9NRZ7 376 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 FRMD4BQ9Y2L6 1034 aa11.3□□□□□ -0.6
LIMA1-201ENST00000341247 PPP1R12BO60237 982 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 ICAM1P05362 532 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 NPEPPSP55786 919 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 RPS6P62753 249 aaKnown RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 PPARDQ03181 441 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 TRAF1Q13077 416 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 SPP2Q13103 211 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 DPY19L2P1Q6NXN4 242 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 CCNI2Q6ZMN8 369 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 DAW1Q8N136 415 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 PRPF38AQ8NAV1 312 aaKnown RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 SYN2Q92777 582 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 FIZ1Q96SL8 496 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 KIFC3Q9BVG8 833 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 METTL14Q9HCE5 456 aaKnown RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 ZHX2Q9Y6X8 837 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 NFKBIEO00221 500 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 ATP9AO75110 1047 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 CYP2C19P33261 490 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 USP8P40818 1118 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 SOX10P56693 466 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 DLG4P78352 724 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 MRPS9P82933 396 aaKnown RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 C8orf74Q6P047 294 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 GLYCTKQ8IVS8 523 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 ZBED3Q96IU2 234 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 KRT12Q99456 494 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 NAGPAQ9UK23 515 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 RBAK-RBAKDNI3L0D1 243 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 PTGER2P43116 358 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 SF3B2Q13435 895 aaKnown RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 MTMR1Q13613 665 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 TRADDQ15628 312 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 UGCGQ16739 394 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 BMT2Q1RMZ1 405 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 MAP9Q49MG5 647 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 CLEC4DQ8WXI8 215 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms