RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 AKT3Q9Y243 479 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 GINS2Q9Y248 185 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 CLIC4Q9Y696 253 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 TCHHQ07283 1943 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 IGKV6-21A0A0C4DH24 114 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 VWA3AA6NCI4 1184 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 BAIAP3O94812 1187 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 CCT6AP40227 531 aaKnown RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 MKRN4PQ13434 485 aaPredicted RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 PKP1Q13835 747 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 BECN1Q14457 450 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 FBXO47Q5MNV8 452 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 ARL6IP4Q66PJ3 421 aaKnown RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 HAUS3Q68CZ6 603 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 FAM109BQ6ICB4 259 aaPredicted RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 POTEGQ6S5H5 508 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 LRCH3Q96II8 777 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 IFIH1Q9BYX4 1025 aaKnown RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 ANKEF1Q9NU02 776 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 PPME1Q9Y570 386 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 SLC4A7Q9Y6M7 1214 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 KDM3AQ9Y4C1 1321 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 GPR32O75388 356 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 BMP15O95972 392 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 PDIA4P13667 645 aaKnown RBP17.03■□□□□ 0.32
UBE3B-201ENST00000340074 CDC25AP30304 524 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 POLGP54098 1239 aaPredicted RBP17.03■□□□□ 0.32
UBE3B-201ENST00000340074 IKBKEQ14164 716 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 ECM1Q16610 540 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 KIZQ2M2Z5 673 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 SNX29Q8TEQ0 813 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 SLC7A3Q8WY07 619 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 SEPT8Q92599 483 aa17.03■□□□□ 0.32
UBE3B-201ENST00000340074 DHX33Q9H6R0 707 aaKnown RBP17.03■□□□□ 0.32
UBE3B-201ENST00000340074 AGO3Q9H9G7 860 aaKnown RBP17.03■□□□□ 0.32
UBE3B-201ENST00000340074 BMP2KQ9NSY1 1161 aaPredicted RBP17.03■□□□□ 0.32
UBE3B-201ENST00000340074 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 ABHD14A-ACY1A0A1B0GW23 586 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 GRXCR1A8MXD5 290 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 ZSCAN22P10073 491 aaPredicted RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 RFC5P40937 340 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 RARRES1P49788 294 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 NLRP11P59045 1033 aaKnown RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 CEBPZQ03701 1054 aaKnown RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 TSHZ1Q6ZSZ6 1077 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 TMEM40Q8WWA1 233 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 ZNF668Q96K58 619 aaPredicted RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 NACC1Q96RE7 527 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 OSMRQ99650 979 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 JPH2Q9BR39 696 aaPredicted RBP17.02■□□□□ 0.31
UBE3B-201ENST00000340074 STK24Q9Y6E0 443 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 SQORQ9Y6N5 450 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 MYH11P35749 1972 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 CDH23Q9H251 3354 aa17.02■□□□□ 0.31
UBE3B-201ENST00000340074 XRCC6P12956 609 aaKnown RBP eCLIP17.01■□□□□ 0.31
UBE3B-201ENST00000340074 MUTP22033 750 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 CD52P31358 61 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 DNM2P50570 870 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 CRYBB1P53674 252 aaPredicted RBP17.01■□□□□ 0.31
UBE3B-201ENST00000340074 WDR5P61964 334 aaKnown RBP17.01■□□□□ 0.31
UBE3B-201ENST00000340074 EMC2Q15006 297 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 PTPAQ15257 358 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 KRT79Q5XKE5 535 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 EXOC8Q8IYI6 725 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 USP38Q8NB14 1042 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 APBB2Q92870 758 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 CCDC43Q96MW1 224 aaKnown RBP17.01■□□□□ 0.31
UBE3B-201ENST00000340074 USP28Q96RU2 1077 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 MMTAG2Q9BU76 263 aaKnown RBP17.01■□□□□ 0.31
UBE3B-201ENST00000340074 ADAMTS10Q9H324 1103 aa17.01■□□□□ 0.31
UBE3B-201ENST00000340074 SUCLA2Q9P2R7 463 aaPredicted RBP17.01■□□□□ 0.31
UBE3B-201ENST00000340074 TTC3P53804 2025 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 F13A1P00488 732 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 ATP2A2P16615 1042 aaKnown RBP17■□□□□ 0.31
UBE3B-201ENST00000340074 KCNJ6P48051 423 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 GPC3P51654 580 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 SMAD3P84022 425 aaKnown RBP17■□□□□ 0.31
UBE3B-201ENST00000340074 GRIN1Q05586 938 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17■□□□□ 0.31
UBE3B-201ENST00000340074 RHPN2Q8IUC4 686 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 TMEM143Q96AN5 459 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 MTRQ99707 1265 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 DDX19AQ9NUU7 478 aaKnown RBP17■□□□□ 0.31
UBE3B-201ENST00000340074 DBR1Q9UK59 544 aaKnown RBP17■□□□□ 0.31
UBE3B-201ENST00000340074 PADI3Q9ULW8 664 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 KIAA1024Q9UPX6 916 aa17■□□□□ 0.31
UBE3B-201ENST00000340074 NOC2LQ9Y3T9 749 aaKnown RBP17■□□□□ 0.31
UBE3B-201ENST00000340074 EFCAB14O75071 495 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 DGAT1O75907 488 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 MARCKSP29966 332 aaPredicted RBP16.99■□□□□ 0.31
UBE3B-201ENST00000340074 DEFB103AP81534 67 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 PAK2Q13177 524 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 FOXD4L6Q3SYB3 417 aaPredicted RBP16.99■□□□□ 0.31
UBE3B-201ENST00000340074 FOXD4L3Q6VB84 417 aaPredicted RBP16.99■□□□□ 0.31
UBE3B-201ENST00000340074 KSR1Q8IVT5 923 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 ZNF710Q8N1W2 664 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 NLRP7Q8WX94 980 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 SLC9A7Q96T83 725 aa16.99■□□□□ 0.31
UBE3B-201ENST00000340074 XPNPEP1Q9NQW7 623 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms