RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 BCO2Q9BYV7 579 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 TMEM117Q9H0C3 514 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 VCPKMTQ9H867 229 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 CDKN2AIPQ9NXV6 580 aaPredicted RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 ADD3Q9UEY8 706 aaKnown RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 PCDHA5Q9Y5H7 936 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 SMIM35A0A1B0GVV1 85 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 PTPDC1A2A3K4 754 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 TRDMT1O14717 391 aaKnown RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 A1BGP04217 495 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 EIF4BP23588 611 aaKnown RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 AXLP30530 894 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 CHRNDQ07001 517 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 KLRC3Q07444 240 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 GPM6BQ13491 265 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 NBR1Q14596 966 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 NR1D2Q14995 579 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 ZNF800Q2TB10 664 aaPredicted RBP eCLIP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 ALDH1L2Q3SY69 923 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 MTERF2Q49AM1 385 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 WDR45BQ5MNZ6 344 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 LILRA6Q6PI73 481 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 SYCE2Q6PIF2 218 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 MAMDC2Q7Z304 686 aaPredicted RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 DHX38Q92620 1227 aaKnown RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 MIB2Q96AX9 1013 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 ACSF2Q96CM8 615 aaPredicted RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 CATSPER2Q96P56 530 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 PIP5K1AQ99755 562 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 MOV10L1Q9BXT6 1211 aaKnown RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 PRDM12Q9H4Q4 367 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 CWH43Q9H720 699 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 GPR27Q9NS67 375 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 ARMCX1Q9P291 453 aa1.93□□□□□ -2.1
LINC00643-201ENST00000334389 NOP58Q9Y2X3 529 aaKnown RBP1.93□□□□□ -2.1
LINC00643-201ENST00000334389 TNRC6AQ8NDV7 1962 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 MYLKQ15746 1914 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 PAX4O43316 350 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 PDE8BO95263 885 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 CYC1P08574 325 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 CFHP08603 1231 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 PNLIPP16233 465 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 CTHP32929 405 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 EIF2S3P41091 472 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 KCNJ6P48051 423 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 DUSP3P51452 185 aaPredicted RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TMPRSS3P57727 454 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 GNAI1P63096 354 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 CAMK1Q14012 370 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 DRAP1Q14919 205 aaPredicted RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ALX1Q15699 326 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TUSC1Q2TAM9 212 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TCEAL5Q5H9L2 206 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 CCDC30Q5VVM6 783 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 FCRL6Q6DN72 434 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 C16orf86Q6ZW13 317 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 PLPPR4Q7Z2D5 763 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SLC39A11Q8N1S5 342 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TMEM174Q8WUU8 243 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 LARP4BQ92615 738 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ZMYND19Q96E35 227 aaPredicted RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 UROC1Q96N76 676 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SPOCK3Q9BQ16 436 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TEX13BQ9BXU2 312 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SENP6Q9GZR1 1112 aaPredicted RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 RETREG1Q9H6L5 497 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 USP40Q9NVE5 1235 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 EVA1BQ9NVM1 165 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TMEM161AQ9NX61 479 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SUSD2Q9UGT4 822 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ASB3Q9Y575 518 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 LRRK2Q5S007 2527 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SUV39H1O43463 412 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 B4GALT4O60513 344 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ADRB2P07550 413 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 GUCY1A2P33402 732 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ACTN2P35609 894 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 HSD17B4P51659 736 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 FOSBP53539 338 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 EIF3IQ13347 325 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 RRS1Q15050 365 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SLC10A6Q3KNW5 377 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 NUTM2GQ5VZR2 741 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 MAP4K3Q8IVH8 894 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 COLGALT1Q8NBJ5 622 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ACRBPQ8NEB7 543 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 LEO1Q8WVC0 666 aaPredicted RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 DNASE2BQ8WZ79 361 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 DDX27Q96GQ7 796 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 SECISBP2Q96T21 854 aaKnown RBP1.92□□□□□ -2.1
LINC00643-201ENST00000334389 PRR14Q9BWN1 585 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 OSBPL7Q9BZF2 842 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 GOPCQ9HD26 462 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ERVK-5Q9HDB9 667 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 PARD6AQ9NPB6 346 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 ATP8A2Q9NTI2 1148 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 CPA4Q9UI42 421 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 TSKSQ9UJT2 592 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 DNMT3LQ9UJW3 386 aa1.92□□□□□ -2.1
LINC00643-201ENST00000334389 FLNBO75369 2602 aaKnown RBP1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms