RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 POTEMA6NI47 508 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 ZBTB39O15060 712 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 CA3P07451 260 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 TBC1D8BQ0IIM8 1120 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 DRP2Q13474 957 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 C4orf19Q8IY42 314 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 ZNF579Q8NAF0 562 aaKnown RBP17.74■□□□□ 0.43
CLN3-201ENST00000333496 USP38Q8NB14 1042 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 HSD17B14Q9BPX1 270 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 EIF2AK1Q9BQI3 630 aaKnown RBP17.74■□□□□ 0.43
CLN3-201ENST00000333496 SUGCTQ9HAC7 445 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 SLC28A3Q9HAS3 691 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 PADI3Q9ULW8 664 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 GINS2Q9Y248 185 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 PCDHB6Q9Y5E3 794 aa17.74■□□□□ 0.43
CLN3-201ENST00000333496 LCHNA4D1U4 455 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 TLL1O43897 1013 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 NPEPPSP55786 919 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 KIZQ2M2Z5 673 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 MCTP1Q6DN14 999 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 RTN4RL1Q86UN2 441 aaPredicted RBP17.73■□□□□ 0.43
CLN3-201ENST00000333496 MYOCDQ8IZQ8 938 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 LINC01599Q8WXQ3 324 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 NOL7Q9UMY1 257 aaKnown RBP17.73■□□□□ 0.43
CLN3-201ENST00000333496 TRANK1O15050 2925 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 NLRC5Q86WI3 1866 aa17.73■□□□□ 0.43
CLN3-201ENST00000333496 DKC1O60832 514 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLN3-201ENST00000333496 MAFO75444 373 aaPredicted RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 AMHP03971 560 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 OR52Z1P0C646 297 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 TMOD1P28289 359 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 TMEM266Q2M3C6 531 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 LARP1BQ659C4 914 aaKnown RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 FAM117BQ6P1L5 589 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 MYLIPQ8WY64 445 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 TOP1MTQ969P6 601 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 OSMRQ99650 979 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 ZSWIM4Q9H7M6 989 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 CYP26B1Q9NR63 512 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 AKT3Q9Y243 479 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 NOC2LQ9Y3T9 749 aaKnown RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 H3BQV1 296 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 ENPP3O14638 875 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 YWHABP31946 246 aaKnown RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 TECP42680 631 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 CRYBB1P53674 252 aaPredicted RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 NLRP11P59045 1033 aaKnown RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 PPP2R2DQ66LE6 453 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 SPRED2Q7Z698 418 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 TPH2Q8IWU9 490 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 ZNF668Q96K58 619 aaPredicted RBP17.72■□□□□ 0.43
CLN3-201ENST00000333496 MAP7D2Q96T17 732 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 RAD9AQ99638 391 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 ZBED2Q9BTP6 218 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 ADAMTS10Q9H324 1103 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 TMX1Q9H3N1 280 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 STXBP5LQ9Y2K9 1186 aa17.72■□□□□ 0.43
CLN3-201ENST00000333496 SPATA31C1P0DKV0 1188 aa17.71■□□□□ 0.43
CLN3-201ENST00000333496 GPC3P51654 580 aa17.71■□□□□ 0.43
CLN3-201ENST00000333496 HTRA4P83105 476 aaPredicted RBP17.71■□□□□ 0.43
CLN3-201ENST00000333496 TAP1Q03518 808 aa17.71■□□□□ 0.43
CLN3-201ENST00000333496 PAK2Q13177 524 aa17.71■□□□□ 0.43
CLN3-201ENST00000333496 ERVK-5Q9HDB9 667 aa17.71■□□□□ 0.43
CLN3-201ENST00000333496 K7ELQ4 463 aaPredicted RBP17.7■□□□□ 0.42
CLN3-201ENST00000333496 RPS6KA5O75582 802 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 UPP2O95045 317 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 LYPLA2O95372 231 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 NFX1Q12986 1120 aaKnown RBP17.7■□□□□ 0.42
CLN3-201ENST00000333496 PTGDRQ13258 359 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 FAM228AQ86W67 206 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 NEK9Q8TD19 979 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 CEP170P1Q96L14 293 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 PRDM12Q9H4Q4 367 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 DHX33Q9H6R0 707 aaKnown RBP17.7■□□□□ 0.42
CLN3-201ENST00000333496 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.7■□□□□ 0.42
CLN3-201ENST00000333496 ST3GAL5Q9UNP4 418 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 COL4A6Q14031 1691 aa17.7■□□□□ 0.42
CLN3-201ENST00000333496 A0A087WWV3 80 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 MGEA5O60502 916 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 CATSPER3Q86XQ3 398 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 FTHL17Q9BXU8 183 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 FNDC1Q4ZHG4 1894 aaPredicted RBP17.69■□□□□ 0.42
CLN3-201ENST00000333496 UNC80Q8N2C7 3258 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 MED24O75448 989 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 FXR2P51116 673 aaKnown RBP eCLIP17.69■□□□□ 0.42
CLN3-201ENST00000333496 RILPL1Q5EBL4 403 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 XKR9Q5GH70 373 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 OTUD6AQ7L8S5 288 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 CRIPAKQ8N1N5 446 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 SNX21Q969T3 373 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 INTS4Q96HW7 963 aaKnown RBP17.69■□□□□ 0.42
CLN3-201ENST00000333496 TSPYL2Q9H2G4 693 aaPredicted RBP17.69■□□□□ 0.42
CLN3-201ENST00000333496 CERS4Q9HA82 394 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 PPME1Q9Y570 386 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 INSL6Q9Y581 213 aa17.69■□□□□ 0.42
CLN3-201ENST00000333496 COL4A4P53420 1690 aaPredicted RBP17.68■□□□□ 0.42
CLN3-201ENST00000333496 RALGAPA2Q2PPJ7 1873 aa17.68■□□□□ 0.42
CLN3-201ENST00000333496 KIAA1671Q9BY89 1806 aa17.68■□□□□ 0.42
CLN3-201ENST00000333496 EIF4BP23588 611 aaKnown RBP17.68■□□□□ 0.42
CLN3-201ENST00000333496 IL17AQ16552 155 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms