RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SLC39A14Q15043 492 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 SHHQ15465 462 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 TMEM240Q5SV17 173 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 ZNF365Q70YC5 407 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 SLC7A3Q8WY07 619 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 NACC1Q96RE7 527 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 JPH2Q9BR39 696 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 MMTAG2Q9BU76 263 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 DDX19AQ9NUU7 478 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 KIAA1024Q9UPX6 916 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 SIP14410 1827 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 EVPLQ92817 2033 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 FGBP02675 491 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 LONP1P36776 959 aaKnown RBP17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 RFC5P40937 340 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 DRP2Q13474 957 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 AK8Q96MA6 479 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 FBXO2Q9UK22 296 aaPredicted RBP17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 GINS2Q9Y248 185 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 RANBP2P49792 3224 aaKnown RBP17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 KDM3AQ9Y4C1 1321 aa17.73■□□□□ 0.43
CCDC28A-201ENST00000332797 IGKV6-21A0A0C4DH24 114 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 CXCL10P02778 98 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 GHRP10912 638 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 XRCC6P12956 609 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 RARRES1P49788 294 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 DNM2P50570 870 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 EMC2Q15006 297 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 OTOP2Q7RTS6 562 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 CABP7Q86V35 215 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 EXOC8Q8IYI6 725 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 LINC00301Q8NCQ3 95 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 CDK5RAP3Q96JB5 506 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 RNPC3Q96LT9 517 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 CELF4Q9BZC1 486 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 OSBPL7Q9BZF2 842 aa17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 DHX33Q9H6R0 707 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 DBR1Q9UK59 544 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 SRPRBQ9Y5M8 271 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-201ENST00000332797 A0A1W2PPC1 479 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 ACTN1P12814 892 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 UBA7P41226 1012 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 DNM1Q05193 864 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 MKRN4PQ13434 485 aaPredicted RBP17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 KIZQ2M2Z5 673 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 CLIC6Q96NY7 704 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 MTRQ99707 1265 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 CSRNP2Q9H175 543 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 ATP6V0A4Q9HBG4 840 aa17.71■□□□□ 0.43
CCDC28A-201ENST00000332797 ARHGEF35A5YM69 484 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 ZBBXA8MT70 800 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 SPTLC2O15270 562 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 USO1O60763 962 aaKnown RBP17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 DGAT1O75907 488 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 YEATS4O95619 227 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 NLRP11P59045 1033 aaKnown RBP17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 LPIN1Q14693 890 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 SPECC1Q5M775 1068 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 FBXO47Q5MNV8 452 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 ATL3Q6DD88 541 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 CNKSR3Q6P9H4 555 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 KRI1Q8N9T8 703 aaKnown RBP17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 RASSF8Q8NHQ8 419 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 TMEM143Q96AN5 459 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 ZNF668Q96K58 619 aaPredicted RBP17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 SCLT1Q96NL6 688 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 PNMA5Q96PV4 448 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 PLIN2Q99541 437 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 OSMRQ99650 979 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 CDHR5Q9HBB8 845 aa17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 SUCLA2Q9P2R7 463 aaPredicted RBP17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 MORC2Q9Y6X9 1032 aaPredicted RBP17.7■□□□□ 0.42
CCDC28A-201ENST00000332797 E9PMD0 336 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 GAS2O43903 313 aaKnown RBP17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 GPR32O75388 356 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 DDIT3P35638 169 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 GRB10Q13322 594 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 TCTN1Q2MV58 587 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 HYIQ5T013 277 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 RHPN2Q8IUC4 686 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 DBF4BQ8NFT6 615 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 HERVK_113Q902F9 699 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 SEPT8Q92599 483 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 CALML4Q96GE6 196 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 IFIH1Q9BYX4 1025 aaKnown RBP17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 NT5C3AQ9H0P0 336 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 MTIF3Q9H2K0 278 aaKnown RBP17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 BHMT2Q9H2M3 363 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 XPNPEP1Q9NQW7 623 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 CFAP45Q9UL16 551 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 DNM3Q9UQ16 869 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 ATP6V1DQ9Y5K8 247 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 TET1Q8NFU7 2136 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 NCLP19338 710 aaKnown RBP17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 GPC3P51654 580 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 CRYBB1P53674 252 aaPredicted RBP17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 NUCB2P80303 420 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 PLEKHG4Q58EX7 1191 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 PADI6Q6TGC4 694 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 TSHZ1Q6ZSZ6 1077 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms