RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 MICALL2Q8IY33 904 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 POLR3FQ9H1D9 316 aaPredicted RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 IPO11Q9UI26 975 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 EXT2Q93063 718 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 MYO3BQ8WXR4 1341 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 KCNH2Q12809 1159 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 PPP2R5EQ16537 467 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 ZNF699Q32M78 642 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 GSPT2Q8IYD1 628 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 TRIM11Q96F44 468 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 TRIM4Q9C037 500 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 INTS9Q9NV88 658 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 PACSIN2Q9UNF0 486 aaPredicted RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 RPAP1Q9BWH6 1393 aaPredicted RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 CPS1P31327 1500 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 WDR64B1ANS9 1081 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 ACSL3O95573 720 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 MYL1P05976 194 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 RPSAP08865 295 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 CLTAP09496 248 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 TMTC4Q5T4D3 741 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 PRR5LQ6MZQ0 368 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 ALKBH5Q6P6C2 394 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 APOBEC3FQ8IUX4 373 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 ZC3H13Q5T200 1668 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 LRRC53A6NM62 1247 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 MFAP3LO75121 409 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 IL1RL1Q01638 556 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 DHX9Q08211 1270 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 NSUN6Q8TEA1 469 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 SENP2Q9HC62 589 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 SLC12A6Q9UHW9 1150 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 CNOT7Q9UIV1 285 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 TSR3Q9UJK0 312 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 HEY1Q9Y5J3 304 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 PFDN1O60925 122 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 DEPDC1BQ8WUY9 529 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 ELF1P32519 619 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 GPC3P51654 580 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 ZNF211Q13398 564 aaPredicted RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 ARHGEF6Q15052 776 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 RBBP5Q15291 538 aaKnown RBP10.94□□□□□ -0.66
CHD3-201ENST00000330494 ZNF667Q5HYK9 610 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 LRRC43Q8N309 656 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 TCP11Q8WWU5 503 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 C1orf167Q5SNV9 1468 aa10.94□□□□□ -0.66
CHD3-201ENST00000330494 MSH2P43246 934 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 BBS9Q3SYG4 887 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 ARHGAP24Q8N264 748 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 WHAMMQ8TF30 809 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 ATP6V1E2Q96A05 226 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 FAN1Q9Y2M0 1017 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 ANGPTL3Q9Y5C1 460 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 NCK2O43639 380 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 MUM1Q2TAK8 710 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 SHC4Q6S5L8 630 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 FMR1NBQ8N0W7 255 aaPredicted RBP10.93□□□□□ -0.66
CHD3-201ENST00000330494 TSPYL2Q9H2G4 693 aaPredicted RBP10.93□□□□□ -0.66
CHD3-201ENST00000330494 TOM1L1O75674 476 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 ADRA2BP18089 450 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 LDHDQ86WU2 507 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 RMDN2Q96LZ7 410 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 FLT1P17948 1338 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 STK36Q9NRP7 1315 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 SPDYE2BA6NHP3 402 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 TEX33O43247 280 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 CREB3O43889 395 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 SPDYE6P0CI01 402 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 TRIM49P0CI25 452 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 TRIM49CP0CI26 452 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 PLS3P13797 630 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 TMEM62Q0P6H9 643 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 JADE1Q6IE81 842 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.93□□□□□ -0.662e-6■□□□□ 10
CHD3-201ENST00000330494 PARD6BQ9BYG5 372 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 ABHD10Q9NUJ1 306 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 ARHGEF40Q8TER5 1519 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 FGGP02679 453 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 VAMP7P51809 220 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 C12orf60Q5U649 245 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 PCSK1NQ9UHG2 260 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 PPFIA4O75335 1185 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 CAMTA2O94983 1202 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 QARSP47897 775 aaKnown RBP10.93□□□□□ -0.66
CHD3-201ENST00000330494 DR1Q01658 176 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 LMNB2Q03252 620 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 CACNB2Q08289 660 aaPredicted RBP10.93□□□□□ -0.66
CHD3-201ENST00000330494 SLFN12LQ6IEE8 588 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 BBOF1Q8ND07 529 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 PDCD6IPQ8WUM4 868 aaKnown RBP10.93□□□□□ -0.66
CHD3-201ENST00000330494 RABGGTAQ92696 567 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 GINM1Q9NU53 330 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 TTC7AQ9ULT0 858 aaPredicted RBP10.93□□□□□ -0.66
CHD3-201ENST00000330494 NFU1Q9UMS0 254 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 DAGLAQ9Y4D2 1042 aa10.93□□□□□ -0.66
CHD3-201ENST00000330494 SRGAP2BP0DMP2 458 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 KLRK1P26718 216 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 THOC5Q13769 683 aaKnown RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 PANX2Q96RD6 677 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 NME3Q13232 169 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms