RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 CNNM4Q6P4Q7 775 aa18.77■□□□□ 0.59
SCAMP4-201ENST00000316097 SNX29Q8TEQ0 813 aa18.77■□□□□ 0.59
SCAMP4-201ENST00000316097 A1CFQ9NQ94 594 aaKnown RBP18.77■□□□□ 0.59
SCAMP4-201ENST00000316097 KLC4Q9NSK0 619 aa18.77■□□□□ 0.59
SCAMP4-201ENST00000316097 HMGB1P1B2RPK0 211 aaPredicted RBP18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 CHUKO15111 745 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 PALMO75781 387 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 FAM107AO95990 144 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 RDXP35241 583 aaKnown RBP18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 TMEM266Q2M3C6 531 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 ASTE1Q2TB18 679 aaPredicted RBP18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 RNF10Q8N5U6 811 aaKnown RBP18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 CRYGNQ8WXF5 182 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 WNK4Q96J92 1243 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 RNF14Q9UBS8 474 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 PACSIN2Q9UNF0 486 aaPredicted RBP18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 PDXDC1Q6P996 788 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 FEM1BQ9UK73 627 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 ZHX2Q9Y6X8 837 aa18.76■□□□□ 0.59
SCAMP4-201ENST00000316097 USP11P51784 963 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 CENPPQ6IPU0 288 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 WHAMMQ8TF30 809 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 CALML4Q96GE6 196 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 RAVER2Q9HCJ3 691 aaKnown RBP18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 NLRC4Q9NPP4 1024 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 BLOC1S4Q9NUP1 217 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 FLOT1O75955 427 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 SMTNP53814 917 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 DYMQ7RTS9 669 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 GLT8D2Q9H1C3 349 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 ZNF536O15090 1300 aa18.75■□□□□ 0.59
SCAMP4-201ENST00000316097 GOLGA6L10A6NI86 522 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 VCAM1P19320 739 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 MMP14P50281 582 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 AP3B2Q13367 1082 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 KLHL7Q8IXQ5 586 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 LENG9Q96B70 501 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 CYFIP2Q96F07 1278 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 NFIBO00712 420 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 RAD51CO43502 376 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 AMPD3Q01432 767 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 HLTFQ14527 1009 aaKnown RBP eCLIP18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 HGSNATQ68CP4 663 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 GIMAP7Q8NHV1 300 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 CDK5RAP3Q96JB5 506 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 KIAA1683Q9H0B3 1180 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 RPAP3Q9H6T3 665 aaPredicted RBP18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 SLC40A1Q9NP59 571 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 CCPG1Q9ULG6 757 aa18.74■□□□□ 0.59
SCAMP4-201ENST00000316097 SSU72P8A0A1W2PR75 194 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 RASSF9O75901 435 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 PTPRAP18433 802 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 ZNF76P36508 570 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 EHHADHQ08426 723 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 ORC2Q13416 577 aaPredicted RBP18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 PDIA5Q14554 519 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 KRT79Q5XKE5 535 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 CCDC121Q6ZUS5 278 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 FAM160B2Q86V87 743 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 HOOK2Q96ED9 719 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 TMBIM4Q9HC24 238 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 KCNMB3Q9NPA1 279 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 CLSTN1O94985 981 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 IBSPP21815 317 aaPredicted RBP18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 SREBF1P36956 1147 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 HMGCS2P54868 508 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 C6orf89Q6UWU4 347 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 OR2W6PQ8NHA6 318 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 CCDC114Q96M63 670 aa18.73■□□□□ 0.59
SCAMP4-201ENST00000316097 ADM5C9JUS6 153 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 GCOM1H8Y6P7 765 aaPredicted RBP18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 POLR2MP0CAP2 368 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 ALAS1P13196 640 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 GCFC2P16383 781 aaKnown RBP18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 KLRC1P26715 233 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 HSPA9P38646 679 aaKnown RBP18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 PLCB4Q15147 1175 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 APOBEC3FQ8IUX4 373 aaKnown RBP18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 SCYL3Q8IZE3 742 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 INPP4AQ96PE3 977 aaPredicted RBP18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 GRID2IPA4D2P6 1211 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 MYMKA6NI61 221 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 E9PMD0 336 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 CDR1P51861 262 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 SLC9C1Q4G0N8 1177 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 C9orf131Q5VYM1 1079 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 DCAF15Q66K64 600 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 C1orf131Q8NDD1 294 aaKnown RBP18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 ETNPPLQ8TBG4 499 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 GGA2Q9UJY4 613 aa18.72■□□□□ 0.59
SCAMP4-201ENST00000316097 CYP3A7-CYP3A51PA0A087WV96 503 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 MSH4O15457 936 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 SSBP05455 408 aaKnown RBP eCLIP18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 MYZAPP0CAP1 466 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 CYP3A7P24462 503 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 ARFGAP2Q8N6H7 521 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 KLRG1Q96E93 195 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 RAB34Q9BZG1 259 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 PICK1Q9NRD5 415 aa18.71■□□□□ 0.59
SCAMP4-201ENST00000316097 KIAA1024Q9UPX6 916 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms