RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 BMP2KQ9NSY1 1161 aaPredicted RBP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 GINS2Q9Y248 185 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ATP6V1DQ9Y5K8 247 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ARHGEF35A5YM69 484 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PP2D1A8MPX8 630 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NBNO60934 754 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 DGAT1O75907 488 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 VTNP04004 478 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SPATA31C1P0DKV0 1188 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 GHRP10912 638 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 XRCC6P12956 609 aaKnown RBP eCLIP12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MARCKSP29966 332 aaPredicted RBP12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 UBA7P41226 1012 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 RARRES1P49788 294 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 EPHB4P54760 987 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 EMC2Q15006 297 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 IL17AQ16552 155 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TMEM240Q5SV17 173 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ODR4Q5SWX8 454 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ATL3Q6DD88 541 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TSHZ1Q6ZSZ6 1077 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 OTOP2Q7RTS6 562 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PIGOQ8TEQ8 1089 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TCP11Q8WWU5 503 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SEPT8Q92599 483 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CALML4Q96GE6 196 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PPP1R16BQ96T49 567 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CELF4Q9BZC1 486 aaKnown RBP12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NT5C3AQ9H0P0 336 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PRO3102Q9H379 93 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 DDX19AQ9NUU7 478 aaKnown RBP12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 DBR1Q9UK59 544 aaKnown RBP12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CFAP45Q9UL16 551 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KIAA1024Q9UPX6 916 aa12.26□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SLC26A4O43511 780 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 USO1O60763 962 aaKnown RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 EFCAB14O75071 495 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MAFO75444 373 aaPredicted RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 BAIAP3O94812 1187 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 YEATS4O95619 227 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 BRD1O95696 1058 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CHRNA1P02708 482 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CXCL10P02778 98 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NCLP19338 710 aaKnown RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CDC25AP30304 524 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KCNJ6P48051 423 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NASPP49321 788 aaPredicted RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NUCB2P80303 420 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CDC42EP1Q00587 391 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SLC39A14Q15043 492 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PTPAQ15257 358 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SHHQ15465 462 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KIZQ2M2Z5 673 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 C9orf50Q5SZB4 431 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TRAF7Q6Q0C0 670 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CABP7Q86V35 215 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KIAA0319LQ8IZA0 1049 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 USP38Q8NB14 1042 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NLRP7Q8WX94 980 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PSPC1Q8WXF1 523 aaKnown RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 HERVK_113Q902F9 699 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 APBB2Q92870 758 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 IFIH1Q9BYX4 1025 aaKnown RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 DHX33Q9H6R0 707 aaKnown RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 DNM3Q9UQ16 869 aa12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SRPRBQ9Y5M8 271 aaKnown RBP12.25□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 IGKV6-21A0A0C4DH24 114 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ZBTB39O15060 712 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SPTLC2O15270 562 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 GPC3P51654 580 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CRYBB1P53674 252 aaPredicted RBP12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NLRP11P59045 1033 aaKnown RBP12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KRT85P78386 507 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PAK2Q13177 524 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 IKBKEQ14164 716 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 FBXO47Q5MNV8 452 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 RHPN2Q8IUC4 686 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KCTD17Q8N5Z5 321 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 LINC01465Q8N7H1 131 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KRI1Q8N9T8 703 aaKnown RBP12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 LINC00301Q8NCQ3 95 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MCPH1Q8NEM0 835 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 KCNG4Q8TDN1 519 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NLRP4Q96MN2 994 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CEP89Q96ST8 783 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 OSMRQ99650 979 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 BHMT2Q9H2M3 363 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SUCLA2Q9P2R7 463 aaPredicted RBP12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TFIP11Q9UBB9 837 aaKnown RBP12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CCDC39Q9UFE4 941 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 SQORQ9Y6N5 450 aa12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MORC2Q9Y6X9 1032 aaPredicted RBP12.24□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ABHD14A-ACY1A0A1B0GW23 586 aa12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PPP6R2O75170 966 aa12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 RPS6KA5O75582 802 aa12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 EYA4O95677 639 aa12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 DNM1Q05193 864 aaKnown RBP12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 LPIN1Q14693 890 aa12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MBTPS1Q14703 1052 aa12.23□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ECM1Q16610 540 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms