RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 GOLGA8QA0A0J9YX86 632 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 GOLGA8OA6NCC3 632 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 GOLGA8NF8WBI6 632 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 EVI5O60447 810 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 CHGBP05060 677 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 RFX1P22670 979 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 CLEC17AQ6ZS10 378 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 CALR3Q96L12 384 aaKnown RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 OSBPL5Q9H0X9 879 aaPredicted RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 RASGRF2O14827 1237 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 PALMO75781 387 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 QARSP47897 775 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 USP11P51784 963 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 SLC7A5Q01650 507 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 ADCY1Q08828 1119 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 CASP8Q14790 479 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 LINC00116Q8NCU8 138 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 CRAMP1Q96RY5 1269 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 MT-ND3P03897 115 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 TNFAIP2Q03169 654 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 GLE1Q53GS7 698 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 SHC4Q6S5L8 630 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 USH1CQ9Y6N9 552 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 CTNND1O60716 968 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 S100BP04271 92 aaPredicted RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 GCLMP48507 274 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 SEPT6Q14141 434 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 PDIA6Q15084 440 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 RAB44Q7Z6P3 723 aaPredicted RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 GUF1Q8N442 669 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 PRPF38AQ8NAV1 312 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 ZMYND12Q9H0C1 365 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 FAM49AQ9H0Q0 323 aaPredicted RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 ABCB6Q9NP58 842 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 ADAM22Q9P0K1 906 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 HERC5Q9UII4 1024 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 CPSF3Q9UKF6 684 aaKnown RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 ANO9A1A5B4 782 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 KRT3P12035 628 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 PSMA2P25787 234 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 DBN1Q16643 649 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 STAG2Q8N3U4 1231 aa17.13■□□□□ 0.33
USP42-201ENST00000306177 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.13■□□□□ 0.33
USP42-201ENST00000306177 ZNF512BQ96KM6 892 aaPredicted RBP17.13■□□□□ 0.33
USP42-201ENST00000306177 EXOC1LA0A1B0GW35 172 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 POTEFA5A3E0 1075 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 CLTAP09496 248 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 POTEIP0CG38 1075 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 MMEL1Q495T6 779 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 POTEGQ6S5H5 508 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 POTEEQ6S8J3 1075 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 MIPOL1Q8TD10 442 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 SLC16A4O15374 487 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 BAG2O95816 211 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 ZBED1O96006 694 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 SLC8A1P32418 973 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 SLCO1A2P46721 670 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 IFT88Q13099 833 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 CNOT8Q9UFF9 292 aaKnown RBP17.12■□□□□ 0.33
USP42-201ENST00000306177 SYNGAP1Q96PV0 1343 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 PODXLO00592 558 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 TDP2O95551 362 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 NTSR2O95665 410 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 ARL13BQ3SXY8 428 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 KIAA1841Q6NSI8 718 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 APOBEC3FQ8IUX4 373 aaKnown RBP17.12■□□□□ 0.33
USP42-201ENST00000306177 OR6B3Q8NGW1 331 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 SKA2Q8WVK7 121 aaPredicted RBP17.12■□□□□ 0.33
USP42-201ENST00000306177 FDX1P10109 184 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 SPP2Q13103 211 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 ZKSCAN8Q15776 578 aaPredicted RBP17.12■□□□□ 0.33
USP42-201ENST00000306177 NAALADL2Q58DX5 795 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 DSTYKQ6XUX3 929 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 BZW1Q7L1Q6 419 aaKnown RBP17.12■□□□□ 0.33
USP42-201ENST00000306177 PDIK1LQ8N165 341 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 TMEM35BQ8NCS4 154 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 LCMT1Q9UIC8 334 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 DAGLAQ9Y4D2 1042 aa17.12■□□□□ 0.33
USP42-201ENST00000306177 KIAA1210Q9ULL0 1709 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 PP2D1A8MPX8 630 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 TJP3O95049 919 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 ANXA13P27216 316 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 GUCY1A2P33402 732 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 PHKA2P46019 1235 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 GPC5P78333 572 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 CENPUQ71F23 418 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 MTRQ99707 1265 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 ZNF302Q9NR11 478 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 ANAPC7Q9UJX3 599 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 USP32Q8NFA0 1604 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 ITPK1Q13572 414 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 JADE1Q6IE81 842 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 RNF139Q8WU17 664 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 NRXN1Q9ULB1 1477 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 DENND3A2RUS2 1198 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 KPNA2P52292 529 aaKnown RBP17.11■□□□□ 0.33
USP42-201ENST00000306177 THOC5Q13769 683 aaKnown RBP17.11■□□□□ 0.33
USP42-201ENST00000306177 BBS9Q3SYG4 887 aa17.11■□□□□ 0.33
USP42-201ENST00000306177 SRBD1Q8N5C6 995 aaKnown RBP17.11■□□□□ 0.33
USP42-201ENST00000306177 VCX3AQ9NNX9 186 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms