RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 GABBR1Q9UBS5 961 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 ZSCAN20P17040 1043 aaPredicted RBP12.58□□□□□ -0.4
CUX1-202ENST00000292538 CNTN2Q02246 1040 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 ASIC2Q16515 512 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 ARHGAP44Q17R89 818 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 TREML2Q5T2D2 321 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 ZSWIM2Q8NEG5 633 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 ZNF446Q9NWS9 450 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 LARSQ9P2J5 1176 aaKnown RBP12.58□□□□□ -0.4
CUX1-202ENST00000292538 UBIAD1Q9Y5Z9 338 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 SAR1BQ9Y6B6 198 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 UCHL3P15374 230 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 LMNB1P20700 586 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 PSMC2P35998 433 aaKnown RBP12.57□□□□□ -0.4
CUX1-202ENST00000292538 RARRES1P49788 294 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 FSTL1Q12841 308 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 VGLL4Q14135 290 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 SUPT20HL1Q3ZLR7 823 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 FIGNQ5HY92 759 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 SULF1Q8IWU6 871 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 DAW1Q8N136 415 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 PACSIN1Q9BY11 444 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 ELP3Q9H9T3 547 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 AGPAT3Q9NRZ7 376 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 FAM184BQ9ULE4 1060 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 GFPT2O94808 682 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 PON1P27169 355 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 USP8P40818 1118 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 STXBP4Q6ZWJ1 553 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 FRMD5Q7Z6J6 570 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 NCAPG2Q86XI2 1143 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 CEP112Q8N8E3 955 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 NOA1Q8NC60 698 aaKnown RBP12.57□□□□□ -0.4
CUX1-202ENST00000292538 CCDC127Q96BQ5 260 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 DCPSQ96C86 337 aaKnown RBP12.57□□□□□ -0.4
CUX1-202ENST00000292538 CEP170P1Q96L14 293 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 OLFML3Q9NRN5 406 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 SALL4Q9UJQ4 1053 aa12.57□□□□□ -0.4
CUX1-202ENST00000292538 PACSIN2Q9UNF0 486 aaPredicted RBP12.57□□□□□ -0.4
CUX1-202ENST00000292538 A0A087X0T9 212 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 LRRN2O75325 713 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 FAM228BP0C875 321 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 CCND2P30279 289 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 DSG3P32926 999 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 KCTD19Q17RG1 926 aaPredicted RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 KIAA0753Q2KHM9 967 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 GBP6Q6ZN66 633 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 CCDC125Q86Z20 511 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 SLC35C1Q96A29 364 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 GDAP1L1Q96MZ0 367 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 SGIP1Q9BQI5 828 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 CBWD1Q9BRT8 395 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 A1CFQ9NQ94 594 aaKnown RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 ST7Q9NRC1 585 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 TBC1D22BQ9NU19 505 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 ARFGEF1Q9Y6D6 1849 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 WDR64B1ANS9 1081 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 TACC1O75410 805 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 NOP2P46087 812 aaKnown RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 PTK2Q05397 1052 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 EAPPQ56P03 285 aaPredicted RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 GPC2Q8N158 579 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 NSUN6Q8TEA1 469 aaKnown RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 SAAL1Q96ER3 474 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 MMS19Q96T76 1030 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 TEX13BQ9BXU2 312 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 GOLPH3Q9H4A6 298 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 ZNF408Q9H9D4 720 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 EHD2Q9NZN4 543 aa12.56□□□□□ -0.4
CUX1-202ENST00000292538 AJAP1Q9UKB5 411 aaPredicted RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 ZNF214Q9UL59 606 aaPredicted RBP12.56□□□□□ -0.4
CUX1-202ENST00000292538 FRMPD4Q14CM0 1322 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 FTCDO95954 541 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 SERPING1P05155 500 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 DLG4P78352 724 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CBWD6Q4V339 395 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CBWD3Q5JTY5 395 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CBWD5Q5RIA9 395 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 HGSNATQ68CP4 663 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CYFIP1Q7L576 1253 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CLMNQ96JQ2 1002 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 SEPT9Q9UHD8 586 aaPredicted RBP12.55□□□□□ -0.4
CUX1-202ENST00000292538 CSADQ9Y600 493 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 SLC26A4O43511 780 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 USP2O75604 605 aaPredicted RBP12.55□□□□□ -0.4
CUX1-202ENST00000292538 GCLMP48507 274 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 KLHDC7AQ5VTJ3 777 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 NFRKBQ6P4R8 1299 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 HAUS6Q7Z4H7 955 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 EHBP1Q8NDI1 1231 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 FAM84AQ96KN4 292 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 FIZ1Q96SL8 496 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 METTL14Q9HCE5 456 aaKnown RBP12.55□□□□□ -0.4
CUX1-202ENST00000292538 MYO1AQ9UBC5 1043 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 ZMYM2Q9UBW7 1377 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 RPTORQ8N122 1335 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 PSMC5P62195 406 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
CUX1-202ENST00000292538 MAPK7Q13164 816 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CATSPERGQ6ZRH7 1159 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms