RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 TRAPPC9Q96Q05 1148 aa17.04■□□□□ 0.32
CTDSP1-201ENST00000273062 ETNK1Q9HBU6 452 aa17.04■□□□□ 0.32
CTDSP1-201ENST00000273062 FAM207AQ9NSI2 230 aaPredicted RBP17.04■□□□□ 0.32
CTDSP1-201ENST00000273062 USP15Q9Y4E8 981 aaPredicted RBP17.04■□□□□ 0.32
CTDSP1-201ENST00000273062 BZW2Q9Y6E2 419 aaKnown RBP17.04■□□□□ 0.32
CTDSP1-201ENST00000273062 FLOT1O75955 427 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 SESN3P58005 492 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 SEC23AQ15436 765 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 PDXDC2PQ6P474 469 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 APBB1IPQ7Z5R6 666 aaPredicted RBP17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 APLFQ8IW19 511 aaPredicted RBP17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 ENAHQ8N8S7 591 aaPredicted RBP17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 TMEM237Q96Q45 408 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 RNF41Q9H4P4 317 aaPredicted RBP17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 PLAGL2Q9UPG8 496 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 IFNAR1P17181 557 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 GBP1P32455 592 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 HSPA1LP34931 641 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 CCNFP41002 786 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 CUL1Q13616 776 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 GRIK5Q16478 980 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 Q4G0T1 1027 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 MFSD4BQ5TF39 518 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 AZIN2Q96A70 460 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 FERMT2Q96AC1 680 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 NUDCD1Q96RS6 583 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 CYP39A1Q9NYL5 469 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 TMEM59LQ9UK28 342 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 GOLGB1Q14789 3259 aaKnown RBP17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 IRS2Q9Y4H2 1338 aa17.03■□□□□ 0.32
CTDSP1-201ENST00000273062 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 WFS1O76024 890 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 RPN1P04843 607 aaKnown RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 FAM200BP0CF97 657 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 EEF1GP26641 437 aaKnown RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 TNNC1P63316 161 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 CDK17Q00537 523 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 MGAT5Q09328 741 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 RCN2Q14257 317 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 ADSSL1Q8N142 457 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 DYDC1Q8WWB3 177 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 DDX50Q9BQ39 737 aaKnown RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 ANKRD2Q9GZV1 360 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 FOXP1Q9H334 677 aaPredicted RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 NMRK1Q9NWW6 199 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 MYH2Q9UKX2 1941 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 LY75O60449 1722 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 HNRNPRO43390 633 aaKnown RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 ENTPD5O75356 428 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 CACNA2D1P54289 1103 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 MIIPQ5JXC2 388 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 LCA5Q86VQ0 697 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 FANCBQ8NB91 859 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 ESR2Q92731 530 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 IFT74Q96LB3 600 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 CELF4Q9BZC1 486 aaKnown RBP17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 DPH5Q9H2P9 285 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 VCXQ9H320 206 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 EPB41L4BQ9H329 900 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 AZI2Q9H6S1 392 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 AMACRQ9UHK6 382 aa17.02■□□□□ 0.32
CTDSP1-201ENST00000273062 DUOX1Q9NRD9 1551 aa17.02■□□□□ 0.31
CTDSP1-201ENST00000273062 TPD52L2O43399 206 aaKnown RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 SFSWAPQ12872 951 aaKnown RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 MUM1Q2TAK8 710 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 CNPY1Q3B7I2 92 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 FAM47AQ5JRC9 791 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 MGARPQ8TDB4 240 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 PIGOQ8TEQ8 1089 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 ZSCAN10Q96SZ4 725 aaPredicted RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 TRIM31Q9BZY9 425 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 MLXIPLQ9NP71 852 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 ATP8A2Q9NTI2 1148 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 RNF14Q9UBS8 474 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 SCOCQ9UIL1 159 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 RGL2O15211 777 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 LCA5LO95447 670 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 ITGA4P13612 1032 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 KCNA3P22001 575 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 DEUP1Q05D60 604 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 ZNF174Q15697 407 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.01■□□□□ 0.317e-7■■□□□ 12.7
CTDSP1-201ENST00000273062 CRACR2BQ8N4Y2 399 aaPredicted RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 RNF10Q8N5U6 811 aaKnown RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 UHMK1Q8TAS1 419 aaKnown RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 BRIP1Q9BX63 1249 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 DCP1AQ9NPI6 582 aaPredicted RBP17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 SBF2Q86WG5 1849 aa17.01■□□□□ 0.31
CTDSP1-201ENST00000273062 GRID2IPA4D2P6 1211 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 TRIM75PA6NK02 468 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 LRRC53A6NM62 1247 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 PLEKHA8P1O95397 391 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 BAG3O95817 575 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 RASA1P20936 1047 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 MTMR3Q13615 1198 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 DIXDC1Q155Q3 683 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 SFMBT2Q5VUG0 894 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 PRR5LQ6MZQ0 368 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 IRGCQ6NXR0 463 aa17■□□□□ 0.31
CTDSP1-201ENST00000273062 STAG2Q8N3U4 1231 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms