RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 YARSP54577 528 aaKnown RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 YWHAEP62258 255 aaKnown RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 ERVK-9P63128 1117 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 ERVK-24P63145 666 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 C12orf42Q96LP6 360 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 C2orf40Q9H1Z8 148 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 RRAGDQ9NQL2 400 aaPredicted RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 CYP39A1Q9NYL5 469 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 PHKA2P46019 1235 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 CNTN2Q02246 1040 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 PPP2R5CQ13362 524 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 E2F4Q16254 413 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 TMEM119Q4V9L6 283 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 VSIG10LQ86VR7 867 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 SIAH1Q8IUQ4 282 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 CCDC102AQ96A19 550 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 MSTO1Q9BUK6 570 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 PPP2R2CQ9Y2T4 447 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 AFG3L2Q9Y4W6 797 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 SLX4Q8IY92 1834 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 TEX33O43247 280 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 TGFB3P10600 412 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 P4HA1P13674 534 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 PLS3P13797 630 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 ALDH5A1P51649 535 aaPredicted RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 LAMC2Q13753 1193 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 EDRF1Q3B7T1 1238 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 TEPSINQ96N21 525 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 PANX2Q96RD6 677 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 SNCAIPQ9Y6H5 919 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 GNAT1P11488 350 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 RBM10P98175 930 aaKnown RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 SLC35G1Q2M3R5 365 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 SELENOOQ9BVL4 669 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 RUSC1Q9BVN2 902 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 BZW2Q9Y6E2 419 aaKnown RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 DYNC1LI2O43237 492 aaPredicted RBP12.63□□□□□ -0.39
VPS4A-201ENST00000254950 MFAP3LO75121 409 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 KIF4AO95239 1232 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 SLU7O95391 586 aaKnown RBP12.63□□□□□ -0.39
VPS4A-201ENST00000254950 SUPT20HL2P0C7V6 817 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CD19P15391 556 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 SARSP49591 514 aaKnown RBP12.63□□□□□ -0.39
VPS4A-201ENST00000254950 KCNH2Q12809 1159 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 SECISBP2LQ93073 1101 aaKnown RBP12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CPA4Q9UI42 421 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CTAGE15A4D2H0 777 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CLDN3O15551 220 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CTAGE8P0CG41 777 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 FERP16591 822 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 RFC5P40937 340 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 PIK3CAP42336 1068 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 HSD17B4P51659 736 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 SURF1Q15526 300 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 SH3RF1Q7Z6J0 888 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CTAGE6Q86UF2 777 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CTAGE4Q8IX94 777 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 C4orf19Q8IY42 314 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 C4orf32Q8N8J7 132 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 NOX5Q96PH1 765 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 EFCC1Q9HA90 598 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 BLOC1S4Q9NUP1 217 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 CHD4Q14839 1912 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 PHF20L1A8MW92 1017 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 OATP04181 439 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 YBX3P16989 372 aaKnown RBP eCLIP12.63□□□□□ -0.392e-8■■■□□ 15.5
VPS4A-201ENST00000254950 HIRAP54198 1017 aaPredicted RBP12.63□□□□□ -0.39
VPS4A-201ENST00000254950 NT5DC1Q5TFE4 455 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 ZBTB33Q86T24 672 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 RHPN2Q8IUC4 686 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 KIAA1524Q8TCG1 905 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 PPP1R16BQ96T49 567 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 UBIAD1Q9Y5Z9 338 aa12.63□□□□□ -0.39
VPS4A-201ENST00000254950 COL2A1P02458 1487 aaPredicted RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 A0A1B0GTH6 734 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 EIF3DO15371 548 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 MYBP10242 640 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 EFNA5P52803 228 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 EMC2Q15006 297 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 IL17AQ16552 155 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 TREML2Q5T2D2 321 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 LBX2Q6XYB7 198 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 NAPGQ99747 312 aaPredicted RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 HAUS4Q9H6D7 363 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 A0A1W2PQC6 194 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 EML1O00423 815 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 TCF7P36402 384 aaPredicted RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 TNNT3P45378 269 aaPredicted RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 MFAP3P55082 362 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 FRMD5Q7Z6J6 570 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 CEP112Q8N8E3 955 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 U2AF1L4Q8WU68 220 aaKnown RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 TMEM143Q96AN5 459 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 WNK4Q96J92 1243 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 FAM81BQ96LP2 452 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 ERAP1Q9NZ08 941 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 CD44P16070 742 aaKnown RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 GIT2Q14161 759 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 Q3C1V9 767 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 CATSPER4Q7RTX7 472 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms