RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W PHB2P50085 310 aa3.11□□□□□ -1.91
USE1YGL098W NBP35P52920 328 aa3.11□□□□□ -1.91
USE1YGL098W PKP2P53170 491 aa3.11□□□□□ -1.91
USE1YGL098W VOA1P53262 265 aa3.11□□□□□ -1.91
USE1YGL098W ALG12P53730 551 aa3.11□□□□□ -1.91
USE1YGL098W YNR065CP53751 1116 aa3.11□□□□□ -1.91
USE1YGL098W PRM1P53835 661 aa3.11□□□□□ -1.91
USE1YGL098W INN1P53901 409 aa3.11□□□□□ -1.91
USE1YGL098W ALG11P53954 548 aaKnown RBP3.11□□□□□ -1.91
USE1YGL098W KTR6P54070 446 aa3.11□□□□□ -1.91
USE1YGL098W SPR6Q01684 191 aa3.11□□□□□ -1.91
USE1YGL098W TOF2Q02208 771 aa3.11□□□□□ -1.91
USE1YGL098W MRP51Q02950 344 aa3.11□□□□□ -1.91
USE1YGL098W HPT1Q04178 221 aaKnown RBP3.11□□□□□ -1.91
USE1YGL098W GAD1Q04792 585 aa3.11□□□□□ -1.91
USE1YGL098W SPR28Q04921 423 aa3.11□□□□□ -1.91
USE1YGL098W INM2Q05533 292 aa3.11□□□□□ -1.91
USE1YGL098W CDC123Q05791 360 aa3.11□□□□□ -1.91
USE1YGL098W YLR345WQ06137 509 aa3.11□□□□□ -1.91
USE1YGL098W CUR1Q06469 252 aa3.11□□□□□ -1.91
USE1YGL098W YDL057WQ07379 328 aa3.11□□□□□ -1.91
USE1YGL098W FMP25Q08023 583 aa3.11□□□□□ -1.91
USE1YGL098W YOL159CQ08300 171 aa3.11□□□□□ -1.91
USE1YGL098W SCP1Q08873 200 aa3.11□□□□□ -1.91
USE1YGL098W LAP2Q10740 671 aa3.11□□□□□ -1.91
USE1YGL098W ENV7Q12003 364 aa3.11□□□□□ -1.91
USE1YGL098W YPL066WQ12194 479 aa3.11□□□□□ -1.91
USE1YGL098W AHC1Q12433 566 aa3.11□□□□□ -1.91
USE1YGL098W SKS1Q12505 502 aa3.11□□□□□ -1.91
USE1YGL098W MHF2Q3E829 80 aa3.11□□□□□ -1.91
USE1YGL098W COA6Q3E846 104 aa3.11□□□□□ -1.91
USE1YGL098W TY4B-HP0C2J7 1802 aa3.1□□□□□ -1.91
USE1YGL098W TY4B-JP47024 1803 aa3.1□□□□□ -1.91
USE1YGL098W ARG80P07249 177 aa3.1□□□□□ -1.91
USE1YGL098W RPL31AP0C2H8 113 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W RPL31BP0C2H9 113 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W MATALPHA1P0CY06 175 aa3.1□□□□□ -1.91
USE1YGL098W HMLALPHA1P0CY07 175 aa3.1□□□□□ -1.91
USE1YGL098W NAM2P11325 894 aa3.1□□□□□ -1.91
USE1YGL098W MAS2P11914 482 aa3.1□□□□□ -1.91
USE1YGL098W PDX1P16451 410 aa3.1□□□□□ -1.91
USE1YGL098W FUN14P18411 198 aa3.1□□□□□ -1.91
USE1YGL098W SEC59P20048 519 aa3.1□□□□□ -1.91
USE1YGL098W PRP2P20095 876 aaPredicted RBP3.1□□□□□ -1.91
USE1YGL098W PRE1P22141 198 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W TRX1P22217 103 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W DAL2P25335 343 aa3.1□□□□□ -1.91
USE1YGL098W YCL002CP25565 263 aa3.1□□□□□ -1.91
USE1YGL098W BUB3P26449 341 aa3.1□□□□□ -1.91
USE1YGL098W MRPL9P31334 269 aa3.1□□□□□ -1.91
USE1YGL098W CYS3P31373 394 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W CDC12P32468 407 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W VPH1P32563 840 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W NRP1P32770 719 aaKnown RBP RIP-Chip data3.1□□□□□ -1.91not detected
USE1YGL098W BCS1P32839 456 aa3.1□□□□□ -1.91
USE1YGL098W SHP1P34223 423 aa3.1□□□□□ -1.91
USE1YGL098W CTF13P35203 478 aa3.1□□□□□ -1.91
USE1YGL098W CSG2P35206 410 aa3.1□□□□□ -1.91
USE1YGL098W YPT53P36019 220 aa3.1□□□□□ -1.91
USE1YGL098W SOL2P37262 315 aa3.1□□□□□ -1.91
USE1YGL098W YBR063CP38083 404 aa3.1□□□□□ -1.91
USE1YGL098W RRN10P38204 145 aa3.1□□□□□ -1.91
USE1YGL098W AIM46P38885 310 aa3.1□□□□□ -1.91
USE1YGL098W GAA1P39012 614 aa3.1□□□□□ -1.91
USE1YGL098W FLC2P39719 783 aa3.1□□□□□ -1.91
USE1YGL098W HPA3P39979 161 aa3.1□□□□□ -1.91
USE1YGL098W ISC1P40015 477 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W YEN1P40028 759 aa3.1□□□□□ -1.91
USE1YGL098W DOT6P40059 670 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W MGS1P40151 587 aa3.1□□□□□ -1.91
USE1YGL098W MMF1P40185 145 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W TOK1P40310 691 aa3.1□□□□□ -1.91
USE1YGL098W RFC2P40348 353 aa3.1□□□□□ -1.91
USE1YGL098W PKP1P40530 394 aa3.1□□□□□ -1.91
USE1YGL098W MND2P40577 368 aa3.1□□□□□ -1.91
USE1YGL098W LCB2P40970 561 aa3.1□□□□□ -1.91
USE1YGL098W BAP3P41815 604 aa3.1□□□□□ -1.91
USE1YGL098W LOC1P43586 204 aaPredicted RBP3.1□□□□□ -1.91
USE1YGL098W PHO86P46956 311 aa3.1□□□□□ -1.91
USE1YGL098W YJL132WP47014 750 aa3.1□□□□□ -1.91
USE1YGL098W AAD10P47182 288 aa3.1□□□□□ -1.91
USE1YGL098W SKP1P52286 194 aa3.1□□□□□ -1.91
USE1YGL098W UFD1P53044 361 aa3.1□□□□□ -1.91
USE1YGL098W STR3P53101 465 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W YGL101WP53144 215 aa3.1□□□□□ -1.91
USE1YGL098W YGR017WP53210 297 aa3.1□□□□□ -1.91
USE1YGL098W YGR042WP53227 271 aa3.1□□□□□ -1.91
USE1YGL098W YGR053CP53234 283 aa3.1□□□□□ -1.91
USE1YGL098W GND2P53319 492 aa3.1□□□□□ -1.91
USE1YGL098W BUD32P53323 261 aa3.1□□□□□ -1.91
USE1YGL098W MKC7P53379 596 aa3.1□□□□□ -1.91
USE1YGL098W LSM3P57743 89 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W APM1Q00776 475 aaPredicted RBP3.1□□□□□ -1.91
USE1YGL098W REG1Q00816 1014 aa3.1□□□□□ -1.91
USE1YGL098W GRX5Q02784 150 aa3.1□□□□□ -1.91
USE1YGL098W ODC1Q03028 310 aa3.1□□□□□ -1.91
USE1YGL098W MSC1Q03104 513 aa3.1□□□□□ -1.91
USE1YGL098W YMR155WQ03795 547 aa3.1□□□□□ -1.91
USE1YGL098W TPP1Q03796 238 aa3.1□□□□□ -1.91
USE1YGL098W NHX1Q04121 633 aa3.1□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms