RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SLC15A5A6NIM6 579 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 SPTLC1O15269 473 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CAP2P40123 477 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ARHGAP25P42331 645 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 MAPRE1Q15691 268 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ISM2Q6H9L7 571 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CYFIP1Q7L576 1253 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 DGKHQ86XP1 1220 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 MKNK1Q9BUB5 465 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 VTA1Q9NP79 307 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 USTQ9Y2C2 406 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 DAGLAQ9Y4D2 1042 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ZSCAN12O43309 604 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 S100BP04271 92 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CCL23P55773 120 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PHKG1Q16816 387 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 XRRA1Q6P2D8 792 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 SRBD1Q8N5C6 995 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 TBC1D19Q8N5T2 526 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 KIF12Q96FN5 646 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 LLPHQ9BRT6 129 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ISCA1Q9BUE6 129 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 METTL14Q9HCE5 456 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 STK39Q9UEW8 545 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 BCAP29Q9UHQ4 241 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 FEZ2Q9UHY8 353 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 BCORL1Q5H9F3 1711 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 FGAP02671 866 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ATICP31939 592 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 SEL1L2Q5TEA6 688 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ATL3Q6DD88 541 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PPP1R2P3Q6NXS1 205 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PRR23BQ6ZRT6 265 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CCDC149Q6ZUS6 474 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 TAOK1Q7L7X3 1001 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 FAM84BQ96KN1 310 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ZDHHC15Q96MV8 337 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 MYL10Q9BUA6 226 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ASCC2Q9H1I8 757 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PCDHA6Q9UN73 950 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PLA2G4CQ9UP65 541 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PCDHA8Q9Y5H6 950 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 LAMC1P11047 1609 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PNPLA7Q6ZV29 1317 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 H7C1W4 665 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SNAP25P60880 206 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PTH1RQ03431 593 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ITIH3Q06033 890 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 GBP6Q6ZN66 633 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 C16orf45Q96MC5 204 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 HEXIM2Q96MH2 286 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 FOPNLQ96NB1 174 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CAMKK2Q96RR4 588 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ARHGAP9Q9BRR9 750 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 KIAA1024Q9UPX6 916 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 A0A1W2PRG0 241 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SP100P23497 879 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 QARSP47897 775 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PTPN12Q05209 780 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 GJC2Q5T442 439 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 RINT1Q6NUQ1 792 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SCG3Q8WXD2 468 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MRPS27Q92552 414 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SPON2Q9BUD6 331 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PPANQ9NQ55 473 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 USP18Q9UMW8 372 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF197O14709 1029 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 POMCP01189 267 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ADCYAP1R1P41586 468 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 KRT83P78385 493 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 FKBP1CQ5VVH2 108 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 TLK2Q86UE8 772 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PLEKHM2Q8IWE5 1019 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 HVCN1Q96D96 273 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CEP95Q96GE4 821 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 VCXQ9H320 206 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PARVGQ9HBI0 331 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MRPL17Q9NRX2 175 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PANK4Q9NVE7 773 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ITSN1Q15811 1721 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 AOX1Q06278 1338 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MYMKA6NI61 221 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 LAD1O00515 517 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 F13A1P00488 732 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 RPL10AP62906 217 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 TMEM62Q0P6H9 643 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CALCOCO2Q13137 446 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CAMK4Q16566 473 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ANO4Q32M45 955 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 KIAA1755Q5JYT7 1200 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 RUFY3Q7L099 469 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF34Q8IZ26 560 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MIPOL1Q8TD10 442 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 UBXN4Q92575 508 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 NT5C1BQ96P26 610 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PIGSQ96S52 555 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SUDS3Q9H7L9 328 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MYH9P35579 1960 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SLC4A1P02730 911 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms