RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FANCBQ8NB91 859 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 TTC8Q8TAM2 541 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PPP1R12CQ9BZL4 782 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 TBC1D22BQ9NU19 505 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SPACA6W5XKT8 324 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 TNKSO95271 1327 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 CARNS1A5YM72 827 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 HOXA2O43364 376 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 NDUFB5O43674 189 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KRT40Q6A162 431 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KRT39Q6A163 491 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 OSCP1Q8WVF1 389 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SYNGAP1Q96PV0 1343 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KCNK3O14649 394 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SMARCA1P28370 1054 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SERPINB6P35237 376 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 AFAP1L1Q8TED9 768 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ARL8AQ96BM9 186 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 POLR3CQ9BUI4 534 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 BLZF1Q9H2G9 400 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 GIMAP4Q9NUV9 329 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 NDFIP2Q9NV92 336 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 CHCHD3Q9NX63 227 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PRAG1Q86YV5 1406 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ZBED1O96006 694 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SH3BGRP55822 239 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF235Q14590 738 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KIF19Q2TAC6 998 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TMEM259Q4ZIN3 620 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 AARS2Q5JTZ9 985 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 GLB1LQ6UWU2 654 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SCARA5Q6ZMJ2 495 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 LARP4BQ92615 738 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 USP26Q9BXU7 913 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KLHL14Q9P2G3 628 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PCDHGB4Q9UN71 923 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 CCDC85CA6NKD9 419 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ERN1O75460 977 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SYF2O95926 243 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KRT1P04264 644 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 BRD3Q15059 726 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 C10orf76Q5T2E6 689 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TRMT44Q8IYL2 757 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 MGARPQ8TDB4 240 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SLC26A7Q8TE54 656 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ASPSCR1Q9BZE9 553 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KIF17Q9P2E2 1029 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KLHL8Q9P2G9 620 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ABCB11O95342 1321 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 H7C4K7 107 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 CD58P19256 250 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 OCRLQ01968 901 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PHLDB3Q6NSJ2 640 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 NOSTRINQ8IVI9 506 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SMAP1Q8IYB5 467 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 CCDC51Q96ER9 411 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 EGFL8Q99944 293 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 MUC3BQ9H195 1237 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 AFPP02771 609 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 HSPA1AP0DMV8 641 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 HSPA1BP0DMV9 641 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PSMA2P25787 234 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 DDIT3P35638 169 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 RGS2P41220 211 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TRAPPC10P48553 1259 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 NCKAP1LP55160 1127 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KCNA1Q09470 495 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 FAM26FQ5R3K3 315 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 HTATIP2Q9BUP3 242 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 BICRAQ9NZM4 1560 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PTCH1Q13635 1447 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PPP1R12AO14974 1030 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 BRAFP15056 766 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 NR2F2P24468 414 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ART3Q13508 389 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 FAM182BQ5T319 152 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 HSPH1Q92598 858 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TMEM169Q96HH4 297 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KLC2Q9H0B6 622 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 GREM2Q9H772 168 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ELP3Q9H9T3 547 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 KRT82Q9NSB4 513 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 DNAJC17Q9NVM6 304 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TAB2Q9NYJ8 693 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 NDUFB9Q9Y6M9 179 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 CFAP69A5D8W1 941 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SGSM2O43147 1006 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 BUB1BO60566 1050 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SERPIND1P05546 499 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PLD1Q13393 1074 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 BFSP2Q13515 415 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TMED2Q15363 201 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PKN3Q6P5Z2 889 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TMTC3Q6ZXV5 915 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 BRINP3Q76B58 766 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGEF25Q86VW2 580 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 LRRC8CQ8TDW0 803 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TNIP3Q96KP6 325 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SCINQ9Y6U3 715 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PEG3Q9GZU2 1588 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms