RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 EPHA7Q15375 998 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 LRIT3Q3SXY7 679 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 PSRC1Q6PGN9 363 aaPredicted RBP11.06□□□□□ -0.64
CLN3-261ENST00000637686 OTOP2Q7RTS6 562 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 RSPH3Q86UC2 560 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 HERVK_113Q902F9 699 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 FAM167AQ96KS9 214 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 FAM49AQ9H0Q0 323 aaPredicted RBP11.06□□□□□ -0.64
CLN3-261ENST00000637686 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.06□□□□□ -0.64
CLN3-261ENST00000637686 RGL1Q9NZL6 768 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 RCOR1Q9UKL0 485 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 PCDHB6Q9Y5E3 794 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 TANC1Q9C0D5 1861 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 TRIOBPQ9H2D6 2365 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 SMIM35A0A1B0GVV1 85 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 TMEM150BA6NC51 233 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 SOX1O00570 391 aaPredicted RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 STBD1O95210 358 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 PARNO95453 639 aaKnown RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 CHRNA1P02708 482 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 MCM4P33991 863 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 TECP42680 631 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 QARSP47897 775 aaKnown RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 FXR1P51114 621 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLN3-261ENST00000637686 DNM1Q05193 864 aaKnown RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 CTTNQ14247 550 aaKnown RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 XKR3Q5GH77 459 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 FAM26DQ5JW98 314 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 RPAINQ86UA6 219 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 C4orf32Q8N8J7 132 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 KCNG4Q8TDN1 519 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 DYDC2Q96IM9 177 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 EIF2AK1Q9BQI3 630 aaKnown RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 OSBPL7Q9BZF2 842 aa11.05□□□□□ -0.64
CLN3-261ENST00000637686 CXXC1Q9P0U4 656 aaPredicted RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 WRAP73Q9P2S5 460 aaPredicted RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 SEPT9Q9UHD8 586 aaPredicted RBP11.05□□□□□ -0.64
CLN3-261ENST00000637686 POTEMA6NI47 508 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 LAD1O00515 517 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 PPP6R2O75170 966 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 C22orf31O95567 290 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 CXCL10P02778 98 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 ACTN1P12814 892 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 CYP4A11Q02928 519 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 MGAT3Q09327 533 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 TMEM62Q0P6H9 643 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 PTGDRQ13258 359 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 TARBP2Q15633 366 aaKnown RBP11.04□□□□□ -0.64
CLN3-261ENST00000637686 TCTN1Q2MV58 587 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 MTERF2Q49AM1 385 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 RASIP1Q5U651 963 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 FOXD4L5Q5VV16 416 aaPredicted RBP11.04□□□□□ -0.64
CLN3-261ENST00000637686 KIAA0319LQ8IZA0 1049 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 METTL13Q8N6R0 699 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 FOXD4L4Q8WXT5 416 aaPredicted RBP11.04□□□□□ -0.64
CLN3-261ENST00000637686 LRCH3Q96II8 777 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 USP28Q96RU2 1077 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 SH2D3AQ9BRG2 576 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 LXNQ9BS40 222 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 NIFKQ9BYG3 293 aaKnown RBP11.04□□□□□ -0.64
CLN3-261ENST00000637686 CDY2AQ9Y6F7 541 aa11.04□□□□□ -0.64
CLN3-261ENST00000637686 TET1Q8NFU7 2136 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 ZBBXA8MT70 800 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 GRXCR1A8MXD5 290 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 ZBTB39O15060 712 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 MAGEB2O15479 319 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 DKC1O60832 514 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLN3-261ENST00000637686 SLITRK3O94933 977 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 MRPS6P82932 125 aaKnown RBP11.03□□□□□ -0.64
CLN3-261ENST00000637686 SLC39A14Q15043 492 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 IER5Q5VY09 327 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 ARL6IP4Q66PJ3 421 aaKnown RBP11.03□□□□□ -0.64
CLN3-261ENST00000637686 PLA2G4FQ68DD2 849 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 FAM109BQ6ICB4 259 aaPredicted RBP11.03□□□□□ -0.64
CLN3-261ENST00000637686 EFCAB12Q6NXP0 572 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 CNKSR3Q6P9H4 555 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 ANO5Q75V66 913 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 TPH2Q8IWU9 490 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 C4orf19Q8IY42 314 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 NME8Q8N427 588 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 LINC00301Q8NCQ3 95 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 DBF4BQ8NFT6 615 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 LEO1Q8WVC0 666 aaPredicted RBP11.03□□□□□ -0.64
CLN3-261ENST00000637686 HSD17B14Q9BPX1 270 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 MTIF3Q9H2K0 278 aaKnown RBP11.03□□□□□ -0.64
CLN3-261ENST00000637686 ZSWIM4Q9H7M6 989 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 SUGCTQ9HAC7 445 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 TRPV2Q9Y5S1 764 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 LAMA3Q16787 3333 aa11.03□□□□□ -0.64
CLN3-261ENST00000637686 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.02□□□□□ -0.65
CLN3-261ENST00000637686 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.02□□□□□ -0.65
CLN3-261ENST00000637686 M0QZ92 97 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 RPLP2P05387 115 aaKnown RBP11.02□□□□□ -0.65
CLN3-261ENST00000637686 GHRP10912 638 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 YWHABP31946 246 aaKnown RBP11.02□□□□□ -0.65
CLN3-261ENST00000637686 PRPHP41219 470 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 CLCN3P51790 818 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 NPEPPSP55786 919 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 TBC1D8BQ0IIM8 1120 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 PTPAQ15257 358 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms