RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZSWIM4Q9H7M6 989 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.51■□□□□ 0.87
CLN3-259ENST00000637551 WNT7AO00755 349 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 GAS2O43903 313 aaKnown RBP20.5■□□□□ 0.87
CLN3-259ENST00000637551 C22orf31O95567 290 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 FGBP02675 491 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 XRCC6P12956 609 aaKnown RBP eCLIP20.5■□□□□ 0.87
CLN3-259ENST00000637551 TOB1P50616 345 aaPredicted RBP20.5■□□□□ 0.87
CLN3-259ENST00000637551 ZNF697Q5TEC3 545 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 CNKSR3Q6P9H4 555 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 C16orf59Q7L2K0 433 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 ERMNQ8TAM6 284 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 WNT8BQ93098 351 aa20.5■□□□□ 0.87
CLN3-259ENST00000637551 RNPC3Q96LT9 517 aaKnown RBP20.5■□□□□ 0.87
CLN3-259ENST00000637551 CDX2Q99626 313 aaPredicted RBP20.5■□□□□ 0.87
CLN3-259ENST00000637551 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.5■□□□□ 0.873e-6■□□□□ 10.1
CLN3-259ENST00000637551 MORC2Q9Y6X9 1032 aaPredicted RBP20.5■□□□□ 0.87
CLN3-259ENST00000637551 SIP14410 1827 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 ARID2Q68CP9 1835 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 M0QZ92 97 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 EML1O00423 815 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 SYT1P21579 422 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 TMOD1P28289 359 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 EPHB4P54760 987 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 SMAD3P84022 425 aaKnown RBP20.49■□□□□ 0.87
CLN3-259ENST00000637551 SHHQ15465 462 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 UGCGQ16739 394 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 HAUS3Q68CZ6 603 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 OTUD6AQ7L8S5 288 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 C4orf32Q8N8J7 132 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 GJA10Q969M2 543 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 VWCEQ96DN2 955 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 LXNQ9BS40 222 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 TMEM60Q9H2L4 133 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 ZSCAN16Q9H4T2 348 aaPredicted RBP20.49■□□□□ 0.87
CLN3-259ENST00000637551 TUFT1Q9NNX1 390 aa20.49■□□□□ 0.87
CLN3-259ENST00000637551 MICAL3Q7RTP6 2002 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 TMEM265A0A087WTH1 108 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 ABHD14A-ACY1A0A1B0GW23 586 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 SLC26A4O43511 780 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 STBD1O95210 358 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 KLRC1P26715 233 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 TXKP42681 527 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 MRPS6P82932 125 aaKnown RBP20.48■□□□□ 0.87
CLN3-259ENST00000637551 ATP2C1P98194 919 aaPredicted RBP20.48■□□□□ 0.87
CLN3-259ENST00000637551 MGAT3Q09327 533 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 ZNF365Q70YC5 407 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 LINC01465Q8N7H1 131 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 IGSF22Q8N9C0 903 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 MAFAQ8NHW3 353 aaPredicted RBP20.48■□□□□ 0.87
CLN3-259ENST00000637551 PHOSPHO2Q8TCD6 241 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 PPP1R13LQ8WUF5 828 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 SCLYQ96I15 445 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 POLR3CQ9BUI4 534 aaPredicted RBP20.48■□□□□ 0.87
CLN3-259ENST00000637551 CDH23Q9H251 3354 aa20.48■□□□□ 0.87
CLN3-259ENST00000637551 IGKV6-21A0A0C4DH24 114 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 RFC5P40937 340 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 TBC1D8BQ0IIM8 1120 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 PTGDRQ13258 359 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 ZNF174Q15697 407 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 PLEKHG4Q58EX7 1191 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 ODR4Q5SWX8 454 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 C9orf50Q5SZB4 431 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 NCAPH2Q6IBW4 605 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 RUFY4Q6ZNE9 571 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 UIMC1Q96RL1 719 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 CEP89Q96ST8 783 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 MAP7D2Q96T17 732 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 EIF2AK1Q9BQI3 630 aaKnown RBP20.47■□□□□ 0.87
CLN3-259ENST00000637551 ANKEF1Q9NU02 776 aa20.47■□□□□ 0.87
CLN3-259ENST00000637551 STX6O43752 255 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 NBNO60934 754 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 SLITRK3O94933 977 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 HSP90AA1P07900 732 aaKnown RBP20.46■□□□□ 0.87
CLN3-259ENST00000637551 RPA1P27694 616 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 IGBP1P78318 339 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 MBTPS1Q14703 1052 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 GPNMBQ14956 572 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 ANO5Q75V66 913 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 KIAA0319LQ8IZA0 1049 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 BANK1Q8NDB2 785 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 DNAJB3Q8WWF6 145 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 SLC9A7Q96T83 725 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 CYP26B1Q9NR63 512 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 PCDHB6Q9Y5E3 794 aa20.46■□□□□ 0.87
CLN3-259ENST00000637551 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 VPS37CA5D8V6 355 aaPredicted RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 MAFO75444 373 aaPredicted RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 ATP2B1P20020 1258 aa20.45■□□□□ 0.86
CLN3-259ENST00000637551 COL9A1P20849 921 aa20.45■□□□□ 0.86
CLN3-259ENST00000637551 YWHABP31946 246 aaKnown RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 SEPT8Q92599 483 aa20.45■□□□□ 0.86
CLN3-259ENST00000637551 SYMPKQ92797 1274 aaKnown RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 SEMA6BQ9H3T3 888 aa20.45■□□□□ 0.86
CLN3-259ENST00000637551 SEPT9Q9UHD8 586 aaPredicted RBP20.45■□□□□ 0.86
CLN3-259ENST00000637551 TRPV2Q9Y5S1 764 aa20.45■□□□□ 0.86
CLN3-259ENST00000637551 CHRNA1P02708 482 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 DNM2P50570 870 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 MKRN4PQ13434 485 aaPredicted RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms