RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PHKBQ93100 1093 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 JAKMIP1Q96N16 626 aaKnown RBP18.36■□□□□ 0.53
CLN3-246ENST00000636228 ZNF577Q9BSK1 485 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 PLVAPQ9BX97 442 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 GLT8D2Q9H1C3 349 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 BRWD1Q9NSI6 2320 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 LRFN2Q9ULH4 789 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 KDM3AQ9Y4C1 1321 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 RPS6KA5O75582 802 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 CYP3A4P08684 503 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 HMGB1P09429 215 aaKnown RBP18.35■□□□□ 0.53
CLN3-246ENST00000636228 ZP2Q05996 745 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 KIZQ2M2Z5 673 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 MIS18BP1Q6P0N0 1132 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 TEX2Q8IWB9 1127 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 ERVK-5Q9HDB9 667 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 HCN4Q9Y3Q4 1203 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 PCDHGC5Q9Y5F6 944 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 SNX14Q9Y5W7 946 aa18.35■□□□□ 0.53
CLN3-246ENST00000636228 NCK2O43639 380 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 TBX10O75333 385 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 SARSP49591 514 aaKnown RBP18.34■□□□□ 0.53
CLN3-246ENST00000636228 ADAM15Q13444 863 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 ZNF484Q5JVG2 852 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 FAM102BQ5T8I3 360 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 RBM23Q86U06 439 aaKnown RBP18.34■□□□□ 0.53
CLN3-246ENST00000636228 POF1BQ8WVV4 589 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 P2RX5Q93086 422 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 ADAM2Q99965 735 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 ZMYND12Q9H0C1 365 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 C6orf50Q9HD87 102 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 HCSTQ9UBK5 93 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 ST3GAL5Q9UNP4 418 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 PCDHB7Q9Y5E2 793 aa18.34■□□□□ 0.53
CLN3-246ENST00000636228 DENND3A2RUS2 1198 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 MBTPS2O43462 519 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 C22orf31O95567 290 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 VTNP04004 478 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 RCAN1P53805 252 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 PRR16Q569H4 304 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 ADHFE1Q8IWW8 467 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 REXO1Q8N1G1 1221 aaKnown RBP18.33■□□□□ 0.52
CLN3-246ENST00000636228 METTL13Q8N6R0 699 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 KCNB2Q92953 911 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 OSMRQ99650 979 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 GABBR1Q9UBS5 961 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 FAM50BQ9Y247 325 aa18.33■□□□□ 0.52
CLN3-246ENST00000636228 KAT6AQ92794 2004 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 CCDC196A0A1B0GTZ2 297 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 ESYT2A0FGR8 921 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 C19orf67A6NJJ6 358 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 TBKBP1A7MCY6 615 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 PRPF3O43395 683 aaKnown RBP18.32■□□□□ 0.52
CLN3-246ENST00000636228 ALADP13716 330 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 NRIP1P48552 1158 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 NDUFV1P49821 464 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 SMAD2Q15796 467 aaKnown RBP18.32■□□□□ 0.52
CLN3-246ENST00000636228 SPOUT1Q5T280 376 aaKnown RBP18.32■□□□□ 0.52
CLN3-246ENST00000636228 BLOC1S2Q6QNY1 142 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 ZNF668Q96K58 619 aaPredicted RBP18.32■□□□□ 0.52
CLN3-246ENST00000636228 RGS18Q9NS28 235 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 TBC1D22BQ9NU19 505 aa18.32■□□□□ 0.52
CLN3-246ENST00000636228 MAFBQ9Y5Q3 323 aaPredicted RBP18.32■□□□□ 0.52
CLN3-246ENST00000636228 COL1A2P08123 1366 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 NLRC5Q86WI3 1866 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 DCXO43602 365 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 GPR32O75388 356 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 FGFR1P11362 822 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 RPS6KB1P23443 525 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 HSPA4P34932 840 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 CLCN3P51790 818 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 CCT2P78371 535 aaKnown RBP18.31■□□□□ 0.52
CLN3-246ENST00000636228 NAALADL2Q58DX5 795 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 ZNF746Q6NUN9 644 aaPredicted RBP18.31■□□□□ 0.52
CLN3-246ENST00000636228 FAM228AQ86W67 206 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 BBXQ8WY36 941 aaPredicted RBP18.31■□□□□ 0.52
CLN3-246ENST00000636228 GJA10Q969M2 543 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 SLC26A6Q9BXS9 759 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 NCOA5Q9HCD5 579 aaKnown RBP18.31■□□□□ 0.52
CLN3-246ENST00000636228 VPS54Q9P1Q0 977 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 PRKAG3Q9UGI9 489 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 CD207Q9UJ71 328 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 SAMM50Q9Y512 469 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 PCDHA10Q9Y5I2 948 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 TTC3P53804 2025 aa18.31■□□□□ 0.52
CLN3-246ENST00000636228 PRR33A8MZF0 331 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 C9IYK1 514 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 PER2O15055 1255 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 GPR182O15218 404 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 EDIL3O43854 480 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 PSAPP07602 524 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 CRYBB1P53674 252 aaPredicted RBP18.3■□□□□ 0.52
CLN3-246ENST00000636228 AKAP17AQ02040 695 aaKnown RBP18.3■□□□□ 0.52
CLN3-246ENST00000636228 NTRK3Q16288 839 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 SLC24A5Q71RS6 500 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 MICAL1Q8TDZ2 1067 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 CCDC12Q8WUD4 166 aaPredicted RBP18.3■□□□□ 0.52
CLN3-246ENST00000636228 TYW1Q9NV66 732 aaKnown RBP18.3■□□□□ 0.52
CLN3-246ENST00000636228 CLEC1BQ9P126 229 aa18.3■□□□□ 0.52
CLN3-246ENST00000636228 TCEAL9Q9UHQ7 104 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms