RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	CREB3L3	Q68CJ9	461 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	TMEM200B	Q69YZ2	307 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	LILRA6	Q6PI73	481 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	DHX37	Q8IY37	1157 aa	Known RBP	4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	KIAA1958	Q8N8K9	716 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	HIPK4	Q8NE63	616 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	NUDT10	Q8NFP7	164 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	WDR48	Q8TAF3	677 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	RELT	Q969Z4	430 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	NUDT11	Q96G61	164 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	MAML3	Q96JK9	1138 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	TACO1	Q9BSH4	297 aa	Known RBP	4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	TARS2	Q9BW92	718 aa	Known RBP	4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	PCIF1	Q9H4Z3	704 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	SEC61A2	Q9H9S3	476 aa		4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	USP36	Q9P275	1121 aa	Known RBP	4.38	□□□□□ -1.71
CNOT1-223	ENST00000628857	PRAMEF22	A3QJZ6	481 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	PMS2P1	A4D2B8	440 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	ZEB2	O60315	1214 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	B4GALT3	O60512	393 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	PLAT	P00750	562 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	ATP2A2	P16615	1042 aa	Known RBP	4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	EPHB4	P54760	987 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	PPP2CB	P62714	309 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	PPP2CA	P67775	309 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	IL13RA1	P78552	427 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	ROM1	Q03395	351 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	MAP3K12	Q12852	859 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	UBXN11	Q5T124	520 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	EGFLAM	Q63HQ2	1017 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	TRIM68	Q6AZZ1	485 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	FSTL4	Q6MZW2	842 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	CNNM4	Q6P4Q7	775 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	KBTBD2	Q8IY47	623 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	IFNL2	Q8IZJ0	200 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	SMC1B	Q8NDV3	1235 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	OR2W6P	Q8NHA6	318 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	OXSM	Q9NWU1	459 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	UCKL1	Q9NWZ5	548 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	VWA7	Q9Y334	891 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	SLC4A7	Q9Y6M7	1214 aa		4.37	□□□□□ -1.71
CNOT1-223	ENST00000628857	KRTAP4-8	A0A0G2JLE6	195 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857		A0A0G2JNJ9	132 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	PDE8A	O60658	829 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	KPNA6	O60684	536 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	VIL1	P09327	827 aa	Known RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	MYCLP1	P12525	358 aa	Predicted RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	CSF2RB	P32927	897 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	LSS	P48449	732 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	BCAR1	P56945	870 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	SESN2	P58004	480 aa	Predicted RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	USP10	Q14694	798 aa	Known RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	SART3	Q15020	963 aa	Known RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	WDR72	Q3MJ13	1102 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	ZMAT1	Q5H9K5	638 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	TTC38	Q5R3I4	469 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	GRAMD4	Q6IC98	578 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	DDX46	Q7L014	1031 aa	Known RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	KANSL1	Q7Z3B3	1105 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	KRT26	Q7Z3Y9	468 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	RNF180	Q86T96	592 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	THNSL2	Q86YJ6	484 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	PHYKPL	Q8IUZ5	450 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	ZDHHC14	Q8IZN3	488 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	LPP	Q93052	612 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	RBM15	Q96T37	977 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	ELF4	Q99607	663 aa	Predicted RBP	4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	CAAP1	Q9H8G2	361 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857		Q9UFV3	132 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	INVS	Q9Y283	1065 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	DUSP10	Q9Y6W6	482 aa		4.36	□□□□□ -1.71
CNOT1-223	ENST00000628857	UBA6	A0AVT1	1052 aa	Predicted RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	LAMTOR5	O43504	91 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	PRICKLE3	O43900	615 aa	Predicted RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	FOXD2	O60548	495 aa	Predicted RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	IGSF3	O75054	1194 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	PRL	P01236	227 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	ITGB3	P05106	788 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	BPI	P17213	487 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	SYN1	P17600	705 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	SLC9A1	P19634	815 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	CD40	P25942	277 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	MC4R	P32245	332 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	CNR2	P34972	360 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	SOX5	P35711	763 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	STAT3	P40763	770 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	MASP1	P48740	699 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	KPNA1	P52294	538 aa	Predicted RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	SMAD3	P84022	425 aa	Known RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	MOGS	Q13724	837 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	NFYC	Q13952	458 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	C21orf62-AS1	Q17RA5	79 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	SLFN13	Q68D06	897 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	RALYL	Q86SE5	291 aa	Known RBP	4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	TTC9B	Q8N6N2	239 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	ZNF610	Q8N9Z0	462 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	WNT8A	Q9H1J5	351 aa		4.35	□□□□□ -1.71
CNOT1-223	ENST00000628857	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms