RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LAMA3Q16787 3333 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 BAIAP3O94812 1187 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 STBD1O95210 358 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 C22orf31O95567 290 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 CHRNA1P02708 482 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 MRPS6P82932 125 aaKnown RBP16.84■□□□□ 0.29
UPF1-202ENST00000594243 TBC1D8BQ0IIM8 1120 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 PTGDRQ13258 359 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 IKBKEQ14164 716 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 PDIA5Q14554 519 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 TPH2Q8IWU9 490 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 EXOC8Q8IYI6 725 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 METTL13Q8N6R0 699 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 ERMNQ8TAM6 284 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 HSD17B14Q9BPX1 270 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 LXNQ9BS40 222 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 RAB34Q9BZG1 259 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 RGL1Q9NZL6 768 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 STK24Q9Y6E0 443 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 SLC4A7Q9Y6M7 1214 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 KAT6AQ92794 2004 aa16.84■□□□□ 0.29
UPF1-202ENST00000594243 ABHD14A-ACY1A0A1B0GW23 586 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 ZBBXA8MT70 800 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 EFCAB14O75071 495 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 YWHABP31946 246 aaKnown RBP16.83■□□□□ 0.28
UPF1-202ENST00000594243 FXR2P51116 673 aaKnown RBP eCLIP16.83■□□□□ 0.284e-9■■■■■ 40.7
UPF1-202ENST00000594243 SMAD3P84022 425 aaKnown RBP16.83■□□□□ 0.28
UPF1-202ENST00000594243 CYP4A11Q02928 519 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 MGAT3Q09327 533 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 CTTNQ14247 550 aaKnown RBP16.83■□□□□ 0.28
UPF1-202ENST00000594243 TRIP12Q14669 1992 aaPredicted RBP16.83■□□□□ 0.28
UPF1-202ENST00000594243 MBTPS1Q14703 1052 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 TARBP2Q15633 366 aaKnown RBP16.83■□□□□ 0.28
UPF1-202ENST00000594243 MTERF2Q49AM1 385 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 PLEKHG4Q58EX7 1191 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 EFCAB12Q6NXP0 572 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 ANO5Q75V66 913 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 KIAA0319LQ8IZA0 1049 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 ZNF710Q8N1W2 664 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 USP38Q8NB14 1042 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 SEPT8Q92599 483 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 JPH2Q9BR39 696 aaPredicted RBP16.83■□□□□ 0.28
UPF1-202ENST00000594243 TANC1Q9C0D5 1861 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 PPME1Q9Y570 386 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 CDY2AQ9Y6F7 541 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 SQORQ9Y6N5 450 aa16.83■□□□□ 0.28
UPF1-202ENST00000594243 POTEMA6NI47 508 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 LYPLA2O95372 231 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 PRPHP41219 470 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 DNM2P50570 870 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 GPR153Q6NV75 609 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 DTHD1Q6ZMT9 781 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 DBF4BQ8NFT6 615 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 APBB2Q92870 758 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 CELF4Q9BZC1 486 aaKnown RBP16.82■□□□□ 0.28
UPF1-202ENST00000594243 SUGCTQ9HAC7 445 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 TUFT1Q9NNX1 390 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 CYP26B1Q9NR63 512 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 CXXC1Q9P0U4 656 aaPredicted RBP16.82■□□□□ 0.28
UPF1-202ENST00000594243 WRAP73Q9P2S5 460 aaPredicted RBP16.82■□□□□ 0.28
UPF1-202ENST00000594243 TRPV2Q9Y5S1 764 aa16.82■□□□□ 0.28
UPF1-202ENST00000594243 MYH9P35579 1960 aaKnown RBP16.82■□□□□ 0.28
UPF1-202ENST00000594243 KDM3AQ9Y4C1 1321 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 SOX1O00570 391 aaPredicted RBP16.81■□□□□ 0.28
UPF1-202ENST00000594243 STX6O43752 255 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 MAFO75444 373 aaPredicted RBP16.81■□□□□ 0.28
UPF1-202ENST00000594243 XRCC6P12956 609 aaKnown RBP eCLIP16.81■□□□□ 0.28
UPF1-202ENST00000594243 CDC42EP1Q00587 391 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 TMEM62Q0P6H9 643 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 FERMT3Q86UX7 667 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 PHOSPHO2Q8TCD6 241 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 CEP170P1Q96L14 293 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 MAP7D2Q96T17 732 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 POLR3CQ9BUI4 534 aaPredicted RBP16.81■□□□□ 0.28
UPF1-202ENST00000594243 IFIH1Q9BYX4 1025 aaKnown RBP16.81■□□□□ 0.28
UPF1-202ENST00000594243 ZSCAN16Q9H4T2 348 aaPredicted RBP16.81■□□□□ 0.28
UPF1-202ENST00000594243 LRWD1Q9UFC0 647 aa16.81■□□□□ 0.28
UPF1-202ENST00000594243 IGKV6-21A0A0C4DH24 114 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 TMEM150BA6NC51 233 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 BMP15O95972 392 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 GHRP10912 638 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 MUTP22033 750 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 KCNJ6P48051 423 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 ATP2C1P98194 919 aaPredicted RBP16.8■□□□□ 0.28
UPF1-202ENST00000594243 FBXO47Q5MNV8 452 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 ODR4Q5SWX8 454 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 HAUS3Q68CZ6 603 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 TSHZ1Q6ZSZ6 1077 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 FAM43BQ6ZT52 329 aaPredicted RBP16.8■□□□□ 0.28
UPF1-202ENST00000594243 CATSPER3Q86XQ3 398 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 LINC01465Q8N7H1 131 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 SLC7A3Q8WY07 619 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 LRCH3Q96II8 777 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 CEP89Q96ST8 783 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 SLC9A7Q96T83 725 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 SH2D3AQ9BRG2 576 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 ANKEF1Q9NU02 776 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 AKT3Q9Y243 479 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 SCN5AQ14524 2016 aa16.8■□□□□ 0.28
UPF1-202ENST00000594243 SPATA31C1P0DKV0 1188 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms