RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RFC5P40937 340 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 LMAN1P49257 510 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 SKIDA1Q1XH10 827 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 RIOX2Q8IUF8 465 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 URGCPQ8TCY9 931 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 TSGA10Q9BZW7 698 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ABHD16BQ9H3Z7 469 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 SLC38A10Q9HBR0 1119 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 PXMP2Q9NR77 195 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 NWD2Q9ULI1 1742 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 DLG5Q8TDM6 1919 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 GOLGA8IPA6NC78 632 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 GOLGA8JA6NMD2 632 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 USP2O75604 605 aaPredicted RBP10.72□□□□□ -0.69
LIG3-216ENST00000593099 TOMM70O94826 608 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ZBTB48P10074 688 aaPredicted RBP10.72□□□□□ -0.69
LIG3-216ENST00000593099 ACTR2P61160 394 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 PLCB3Q01970 1234 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 CUL4BQ13620 913 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 MAN2A1Q16706 1144 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 FBXL16Q8N461 479 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 KCTD17Q8N5Z5 321 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 CAPNS2Q96L46 248 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ASAP2O43150 1006 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 FKTNO75072 461 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 COPB1P53618 953 aaKnown RBP10.71□□□□□ -0.69
LIG3-216ENST00000593099 MFAP3P55082 362 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 DSTYKQ6XUX3 929 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 XXYLT1Q8NBI6 393 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 MICAL1Q8TDZ2 1067 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 AGXT2Q9BYV1 514 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 POLD4Q9HCU8 107 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 CTTNBP2NLQ9P2B4 639 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 RWDD2AQ9UIY3 292 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 RGPD2P0DJD1 1756 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 HIP1RO75146 1068 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 CTSHP09668 335 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 TCF7P36402 384 aaPredicted RBP10.71□□□□□ -0.69
LIG3-216ENST00000593099 MAGEA1P43355 309 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 KCNJ6P48051 423 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 PTK2Q05397 1052 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 COASYQ13057 564 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 SEPT7Q16181 437 aaKnown RBP10.71□□□□□ -0.69
LIG3-216ENST00000593099 CCDC122Q5T0U0 273 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 PCNX4Q63HM2 1172 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 XPO4Q9C0E2 1151 aaKnown RBP10.71□□□□□ -0.69
LIG3-216ENST00000593099 VTA1Q9NP79 307 aa10.71□□□□□ -0.69
LIG3-216ENST00000593099 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.71□□□□□ -0.69
LIG3-216ENST00000593099 PLCH1Q4KWH8 1693 aa10.71□□□□□ -0.7
LIG3-216ENST00000593099 KPNA6O60684 536 aa10.71□□□□□ -0.7
LIG3-216ENST00000593099 SLURP2P0DP57 97 aa10.71□□□□□ -0.7
LIG3-216ENST00000593099 TGFB3P10600 412 aa10.71□□□□□ -0.7
LIG3-216ENST00000593099 EVCP57679 992 aa10.71□□□□□ -0.7
LIG3-216ENST00000593099 IMPACTQ9P2X3 320 aa10.71□□□□□ -0.7
LIG3-216ENST00000593099 NXF1Q9UBU9 619 aaKnown RBP10.71□□□□□ -0.7
LIG3-216ENST00000593099 FBXO2Q9UK22 296 aaPredicted RBP10.71□□□□□ -0.7
LIG3-216ENST00000593099 ASTN2O75129 1339 aaPredicted RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 CACNA1FO60840 1977 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 PDE6CP51160 858 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 DPCR1Q3MIW9 517 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 HAUS6Q7Z4H7 955 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 OR8K1Q8NGG5 319 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 MAK16Q9BXY0 300 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 ANKEF1Q9NU02 776 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 DCDC2CA8MYV0 355 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 MSH4O15457 936 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 ABL1P00519 1130 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 XRCC6P12956 609 aaKnown RBP eCLIP10.7□□□□□ -0.7
LIG3-216ENST00000593099 POLR2BP30876 1174 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 POLR2FP61218 127 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 INTS8Q75QN2 995 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 C7orf43Q8WVR3 580 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 ZNF830Q96NB3 372 aaPredicted RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 HMX1Q9NP08 348 aaPredicted RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 ODF2LQ9ULJ1 636 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 SLC15A5A6NIM6 579 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 AKR1A1P14550 325 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 CKAP4Q07065 602 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 SPRYD7Q5W111 196 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 CYP4F22Q6NT55 531 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 ARMCX2Q7L311 632 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 CCDC51Q96ER9 411 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 RANBP17Q9H2T7 1088 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 A1CFQ9NQ94 594 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 PCDHB4Q9Y5E5 795 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 C10orf71Q711Q0 1435 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 CAPN9O14815 690 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 COBLO75128 1261 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 RPA1P27694 616 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 ELF1P32519 619 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 MAP2K1Q02750 393 aaPredicted RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 GPIHBP1Q8IV16 184 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 ENOX1Q8TC92 643 aaKnown RBP10.7□□□□□ -0.7
LIG3-216ENST00000593099 KCND2Q9NZV8 630 aa10.7□□□□□ -0.7
LIG3-216ENST00000593099 IKBKBO14920 756 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 DAPK3O43293 454 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 GABPAQ06546 454 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 SEMA3FQ13275 785 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 KYAT1Q16773 422 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 ANKRD23Q86SG2 305 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms