RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	TCEAL9	Q9UHQ7	104 aa		19.49	■□□□□ 0.71
MBD1-221	ENST00000589867	EYS	Q5T1H1	3165 aa		19.49	■□□□□ 0.71
MBD1-221	ENST00000589867	ABHD14A-ACY1	A0A1B0GW23	586 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	GHR	P10912	638 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	GJB2	P29033	226 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	SAFB	Q15424	915 aa	Known RBP eCLIP	19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	NOSTRIN	Q8IVI9	506 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	PHOSPHO2	Q8TCD6	241 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	TIFA	Q96CG3	184 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	FAM167A	Q96KS9	214 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	SLC9A7	Q96T83	725 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	NIFK	Q9BYG3	293 aa	Known RBP	19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	RGL1	Q9NZL6	768 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	KDM3A	Q9Y4C1	1321 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	TRANK1	O15050	2925 aa		19.48	■□□□□ 0.71
MBD1-221	ENST00000589867	TMEM265	A0A087WTH1	108 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	ATP2B1	P20020	1258 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	NBR1	Q14596	966 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	EPHA7	Q15375	998 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	CALCRL	Q16602	461 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	ZNF697	Q5TEC3	545 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	ANO5	Q75V66	913 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	HERC6	Q8IVU3	1022 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	C4orf32	Q8N8J7	132 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	SH2D3A	Q9BRG2	576 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	NKX2-4	Q9H2Z4	354 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	TRPV2	Q9Y5S1	764 aa		19.47	■□□□□ 0.71
MBD1-221	ENST00000589867	NEMF	O60524	1076 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	MCM7	P33993	719 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	CLCN3	P51790	818 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	DRP2	Q13474	957 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	IKBKE	Q14164	716 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	GRIN2C	Q14957	1233 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	ZNF174	Q15697	407 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	XKR3	Q5GH77	459 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	RSPH3	Q86UC2	560 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	SLFN12	Q8IYM2	578 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	NME8	Q8N427	588 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	ZNF579	Q8NAF0	562 aa	Known RBP	19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	TMEM40	Q8WWA1	233 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	LINC01599	Q8WXQ3	324 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	IFIH1	Q9BYX4	1025 aa	Known RBP	19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	CELF4	Q9BZC1	486 aa	Known RBP	19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	PCDHA11	Q9Y5I1	949 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	TTC3	P53804	2025 aa		19.46	■□□□□ 0.71
MBD1-221	ENST00000589867	ZBTB39	O15060	712 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	GPR32	O75388	356 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	PSMC5	P62195	406 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	RAB30	Q15771	203 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	SPRED2	Q7Z698	418 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	RTN4RL1	Q86UN2	441 aa	Predicted RBP	19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	LRRC71	Q8N4P6	559 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	SEPT8	Q92599	483 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	DYDC2	Q96IM9	177 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	CDX2	Q99626	313 aa	Predicted RBP	19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	HSD17B14	Q9BPX1	270 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	ZNF576	Q9H609	170 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	TTC12	Q9H892	705 aa	Predicted RBP	19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	NRBP2	Q9NSY0	501 aa		19.45	■□□□□ 0.7
MBD1-221	ENST00000589867	PRUNE2	Q8WUY3	3088 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	IGKV6-21	A0A0C4DH24	114 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	LCHN	A4D1U4	455 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	MAGEB2	O15479	319 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	SLITRK3	O94933	977 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	VTN	P04004	478 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	RPLP2	P05387	115 aa	Known RBP	19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	P4HB	P07237	508 aa	Known RBP	19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	CD52	P31358	61 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	QARS	P47897	775 aa	Known RBP	19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	TTC38	Q5R3I4	469 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	IER5	Q5VY09	327 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	PLA2G4F	Q68DD2	849 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	NCAPH2	Q6IBW4	605 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	EFCAB12	Q6NXP0	572 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	TSHZ1	Q6ZSZ6	1077 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	ADAMTS10	Q9H324	1103 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	SEPT9	Q9UHD8	586 aa	Predicted RBP	19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	PCDHA12	Q9UN75	941 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	CEP131	Q9UPN4	1083 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	SQOR	Q9Y6N5	450 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	ARID2	Q68CP9	1835 aa		19.44	■□□□□ 0.7
MBD1-221	ENST00000589867	COL4A6	Q14031	1691 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	EFCAB14	O75071	495 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	GJB5	O95377	273 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	BAG4	O95429	457 aa	Known RBP	19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	TXK	P42681	527 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	KCNJ6	P48051	423 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	TRAPPC10	P48553	1259 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	NPEPPS	P55786	919 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	CTTN	Q14247	550 aa	Known RBP	19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	MTERF2	Q49AM1	385 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	C4orf19	Q8IY42	314 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	APBB2	Q92870	758 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	PPP1R16B	Q96T49	567 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	EIF2AK1	Q9BQI3	630 aa	Known RBP	19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	LXN	Q9BS40	222 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	TMX1	Q9H3N1	280 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	MSRA	Q9UJ68	235 aa		19.43	■□□□□ 0.7
MBD1-221	ENST00000589867	SMC3	Q9UQE7	1217 aa		19.43	■□□□□ 0.7

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms