RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	COPB2	P35606	906 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	QARS	P47897	775 aa	Known RBP	17	■□□□□ 0.31
DDX39A-209	ENST00000589318	CASP5	P51878	434 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	JAK3	P52333	1124 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	GTF2A2	P52657	109 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	COPB1	P53618	953 aa	Known RBP	17	■□□□□ 0.31
DDX39A-209	ENST00000589318	ERVK-9	P63128	1117 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	ERVK-24	P63145	666 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	MKRN3	Q13064	507 aa	Known RBP	17	■□□□□ 0.31
DDX39A-209	ENST00000589318	TBX2	Q13207	712 aa	Predicted RBP	17	■□□□□ 0.31
DDX39A-209	ENST00000589318	ICE2	Q659A1	982 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	ZNF746	Q6NUN9	644 aa	Predicted RBP	17	■□□□□ 0.31
DDX39A-209	ENST00000589318	NOC3L	Q8WTT2	800 aa	Known RBP	17	■□□□□ 0.31
DDX39A-209	ENST00000589318	SCFD1	Q8WVM8	642 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	EEF2KMT	Q96G04	330 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	CDHR1	Q96JP9	859 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	POLD4	Q9HCU8	107 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	SAMM50	Q9Y512	469 aa		17	■□□□□ 0.31
DDX39A-209	ENST00000589318	DNAJC25-GNG10	A0A024R161	153 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	CCL15-CCL14	A0A0B4J2E2	113 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	PDHX	O00330	501 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	SP2	Q02086	613 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	CCL15	Q16663	113 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	GNPTAB	Q3T906	1256 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	SPRYD7	Q5W111	196 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	SYT10	Q6XYQ8	523 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	EPM2AIP1	Q7L775	607 aa	Predicted RBP	16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	RDM1	Q8NG50	284 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	TAB2	Q9NYJ8	693 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	KCND2	Q9NZV8	630 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	PNMA3	Q9UL41	463 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	MCM3AP	O60318	1980 aa		16.99	■□□□□ 0.31
DDX39A-209	ENST00000589318	EEF1G	P26641	437 aa	Known RBP	16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	GTF2A1	P52655	376 aa	Predicted RBP	16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	ZNF131	P52739	623 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	LRRC63	Q05C16	580 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	C4orf19	Q8IY42	314 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	PORCN	Q9H237	461 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	KCTD10	Q9H3F6	313 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	ZHX3	Q9H4I2	956 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	DBR1	Q9UK59	544 aa	Known RBP	16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	ARID2	Q68CP9	1835 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	NKRF	O15226	690 aa	Known RBP eCLIP	16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	PGK2	P07205	417 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	ZBTB48	P10074	688 aa	Predicted RBP	16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	GUCY2C	P25092	1073 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	RARRES1	P49788	294 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	SPECC1L	Q69YQ0	1117 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	LRRC55	Q6ZSA7	311 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	ANKRD23	Q86SG2	305 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	SHCBP1	Q8NEM2	672 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	VPS16	Q9H269	839 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	MROH8	Q9H579	483 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	OLFML3	Q9NRN5	406 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	COL4A3BP	Q9Y5P4	624 aa		16.98	■□□□□ 0.31
DDX39A-209	ENST00000589318	PLXNB2	O15031	1838 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	SOCS7	O14512	581 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	HOXD13	P35453	343 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	PSMC5	P62195	406 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	MAPK7	Q13164	816 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	SRL	Q86TD4	932 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	MNS1	Q8NEH6	495 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	ZNF526	Q8TF50	670 aa	Predicted RBP	16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	GTF3C2	Q8WUA4	911 aa	Predicted RBP	16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	PPP1R13B	Q96KQ4	1090 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	FIZ1	Q96SL8	496 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	JPH1	Q9HDC5	661 aa	Predicted RBP	16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	SLC9A2	Q9UBY0	812 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	PCDHA10	Q9Y5I2	948 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	PLXNA1	Q9UIW2	1896 aa		16.97	■□□□□ 0.31
DDX39A-209	ENST00000589318	ARHGEF35	A5YM69	484 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	SFI1	A8K8P3	1242 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	N4BP3	O15049	544 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	TBCA	O75347	108 aa	Known RBP	16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	YWHAB	P31946	246 aa	Known RBP	16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	FILIP1L	Q4L180	1135 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	DAW1	Q8N136	415 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	MSL3	Q8N5Y2	521 aa	Known RBP	16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	CNOT6L	Q96LI5	555 aa	Known RBP	16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	MMP19	Q99542	508 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	PTPN18	Q99952	460 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	TRMT1	Q9NXH9	659 aa	Known RBP	16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	DNAI1	Q9UI46	699 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	ODF2L	Q9ULJ1	636 aa		16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	MYH9	P35579	1960 aa	Known RBP	16.96	■□□□□ 0.31
DDX39A-209	ENST00000589318	TMEM150B	A6NC51	233 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	ZNF862	O60290	1169 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	MYB	P10242	640 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	GAP43	P17677	238 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	ETF1	P62495	437 aa	Known RBP	16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	BMT2	Q1RMZ1	405 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	PADI6	Q6TGC4	694 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	ABHD15	Q6UXT9	468 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	NELFCD	Q8IXH7	590 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	ANKRD20A12P	Q8NF67	263 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	NEK11	Q8NG66	645 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	ZNF507	Q8TCN5	953 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	TCEAL9	Q9UHQ7	104 aa		16.96	■□□□□ 0.3
DDX39A-209	ENST00000589318	LGALS16	A8MUM7	142 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	STBD1	O95210	358 aa		16.95	■□□□□ 0.3

Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms