RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 PRRX2Q99811 253 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 S1PR5Q9H228 398 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 RGS18Q9NS28 235 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 TYW1Q9NV66 732 aaKnown RBP24.91■■□□□ 1.58
SHMT1-210ENST00000583780 PCDHB12Q9Y5F1 795 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 C9IYK1 514 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 FSCN2O14926 492 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 FGF18O76093 207 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 CASC1Q6TDU7 716 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 TMEM184AQ6ZMB5 413 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 RAB11FIP4Q86YS3 637 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 SUGP1Q8IWZ8 645 aaKnown RBP24.9■■□□□ 1.58
SHMT1-210ENST00000583780 ADAM2Q99965 735 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 CWH43Q9H720 699 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 TLR9Q9NR96 1032 aa24.9■■□□□ 1.58
SHMT1-210ENST00000583780 TBKBP1A7MCY6 615 aa24.89■■□□□ 1.58
SHMT1-210ENST00000583780 IBSPP21815 317 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-210ENST00000583780 LIFRP42702 1097 aa24.89■■□□□ 1.58
SHMT1-210ENST00000583780 VCPP55072 806 aaKnown RBP24.89■■□□□ 1.58
SHMT1-210ENST00000583780 FAM189BP81408 668 aa24.89■■□□□ 1.58
SHMT1-210ENST00000583780 FAM43BQ6ZT52 329 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-210ENST00000583780 TMEM87BQ96K49 555 aa24.89■■□□□ 1.58
SHMT1-210ENST00000583780 AGO4Q9HCK5 861 aaKnown RBP24.89■■□□□ 1.58
SHMT1-210ENST00000583780 ST3GAL5Q9UNP4 418 aa24.89■■□□□ 1.58
SHMT1-210ENST00000583780 CCDC69A6NI79 296 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 RPS6KA5O75582 802 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 MCM5P33992 734 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 TYW1BQ6NUM6 668 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 NFXL1Q6ZNB6 911 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 TMTC3Q6ZXV5 915 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 SLC24A5Q71RS6 500 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 FANCBQ8NB91 859 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 COLGALT1Q8NBJ5 622 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 PGBD1Q96JS3 809 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 SDF4Q9BRK5 362 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 AAASQ9NRG9 546 aa24.88■■□□□ 1.57
SHMT1-210ENST00000583780 ZFHX2Q9C0A1 2572 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-210ENST00000583780 MEIS1O00470 390 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 CCNE2O96020 404 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 CALM1P0DP23 149 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 CALM2P0DP24 149 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 CALM3P0DP25 149 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 AVPR2P30518 371 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 CEP55Q53EZ4 464 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 SPOUT1Q5T280 376 aaKnown RBP24.87■■□□□ 1.57
SHMT1-210ENST00000583780 SYCE2Q6PIF2 218 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 ABHD15Q6UXT9 468 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 SNX27Q96L92 541 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 NEK1Q96PY6 1258 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 CDCA3Q99618 268 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-210ENST00000583780 C1orf112Q9NSG2 853 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 TMEM260Q9NX78 707 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 GINS2Q9Y248 185 aa24.87■■□□□ 1.57
SHMT1-210ENST00000583780 MYH9P35579 1960 aaKnown RBP24.86■■□□□ 1.57
SHMT1-210ENST00000583780 ZBTB42B2RXF5 422 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 ST18O60284 1047 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 HBP1O60381 514 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 ATP4AP20648 1035 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 SLC26A2P50443 739 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 PDE12Q6L8Q7 609 aaKnown RBP24.86■■□□□ 1.57
SHMT1-210ENST00000583780 HEATR3Q7Z4Q2 680 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 CFAP54Q96N23 3096 aa24.86■■□□□ 1.57
SHMT1-210ENST00000583780 PTPN21Q16825 1174 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 WWC2Q6AWC2 1192 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 ANKRD54Q6NXT1 300 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 LRRC55Q6ZSA7 311 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 RASGRP4Q8TDF6 673 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 RIC8AQ9NPQ8 531 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 FAM86C1Q9NVL1 165 aa24.85■■□□□ 1.57
SHMT1-210ENST00000583780 DHX15O43143 795 aaKnown RBP24.84■■□□□ 1.57
SHMT1-210ENST00000583780 FGFR1P11362 822 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 PLCB3Q01970 1234 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 APOBRQ0VD83 1088 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 DSC3Q14574 896 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 THNSL1Q8IYQ7 743 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 LRRC2Q9BYS8 371 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 TMEM161AQ9NX61 479 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 LZTS1Q9Y250 596 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 SLC12A7Q9Y666 1083 aa24.84■■□□□ 1.57
SHMT1-210ENST00000583780 PTPRZ1P23471 2315 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-210ENST00000583780 WDR81Q562E7 1941 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 DENND3A2RUS2 1198 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 GPR182O15218 404 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 TECP42680 631 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 ZNF484Q5JVG2 852 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 FAM228AQ86W67 206 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 CCDC60Q8IWA6 550 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-210ENST00000583780 MRPS27Q92552 414 aaKnown RBP24.83■■□□□ 1.57
SHMT1-210ENST00000583780 LSG1Q9H089 658 aaKnown RBP24.83■■□□□ 1.57
SHMT1-210ENST00000583780 ELAC1Q9H777 363 aaKnown RBP24.83■■□□□ 1.57
SHMT1-210ENST00000583780 RNF19AQ9NV58 838 aa24.83■■□□□ 1.57
SHMT1-210ENST00000583780 COL1A2P08123 1366 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 FSD2A1L4K1 749 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 HIDE1A8MVS5 230 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 GPR32O75388 356 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 FOSP01100 380 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-210ENST00000583780 PDGFBP01127 241 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-210ENST00000583780 PLXNA3P51805 1871 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 CRYBB1P53674 252 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-210ENST00000583780 FUT2Q10981 343 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms