RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 AXDND1Q5T1B0 1012 aaPredicted RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 TAF2Q6P1X5 1199 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 OTUD6AQ7L8S5 288 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 SERINC5Q86VE9 423 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 CCDC155Q8N6L0 562 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 CCDC43Q96MW1 224 aaKnown RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 NIFKQ9BYG3 293 aaKnown RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 PRDM5Q9NQX1 630 aaPredicted RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 PDLIM7Q9NR12 457 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 TMEM39AQ9NV64 488 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 WRAP73Q9P2S5 460 aaPredicted RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 TBX21Q9UL17 535 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 PPME1Q9Y570 386 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 PP2D1A8MPX8 630 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 TREHO43280 583 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 STBD1O95210 358 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 RPLP2P05387 115 aaKnown RBP17.32■□□□□ 0.36
SS18-216ENST00000580751 UBA7P41226 1012 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 HIC1Q14526 733 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 ANO5Q75V66 913 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 KCTD17Q8N5Z5 321 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 NACC1Q96RE7 527 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 PYM1Q9BRP8 204 aaKnown RBP17.32■□□□□ 0.36
SS18-216ENST00000580751 NT5C3AQ9H0P0 336 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 CSRNP2Q9H175 543 aa17.32■□□□□ 0.36
SS18-216ENST00000580751 ZBTB42B2RXF5 422 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 KIAA0355O15063 1070 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 TNRC18O15417 2968 aaPredicted RBP17.31■□□□□ 0.36
SS18-216ENST00000580751 MAGEB2O15479 319 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 CYP2C9P11712 490 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 XRCC6P12956 609 aaKnown RBP eCLIP17.31■□□□□ 0.36
SS18-216ENST00000580751 CDC25AP30304 524 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 TXLNAP40222 546 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 ZNF200P98182 395 aaPredicted RBP17.31■□□□□ 0.36
SS18-216ENST00000580751 GRIN1Q05586 938 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 BFSP2Q13515 415 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 TARBP2Q15633 366 aaKnown RBP17.31■□□□□ 0.36
SS18-216ENST00000580751 MTERF2Q49AM1 385 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 MARCH8Q5T0T0 291 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 POTEGQ6S5H5 508 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 MTHFD1LQ6UB35 978 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 CABP7Q86V35 215 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 EXOC8Q8IYI6 725 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 CAGE1Q8TC20 777 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 TRAPPC12Q8WVT3 735 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 MRPS27Q92552 414 aaKnown RBP17.31■□□□□ 0.36
SS18-216ENST00000580751 SYAP1Q96A49 352 aaPredicted RBP17.31■□□□□ 0.36
SS18-216ENST00000580751 CALML4Q96GE6 196 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 CDK5RAP3Q96JB5 506 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 CTAGE1Q96RT6 745 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 MMTAG2Q9BU76 263 aaKnown RBP17.31■□□□□ 0.36
SS18-216ENST00000580751 CYP26B1Q9NR63 512 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 ANKEF1Q9NU02 776 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 PCDHA2Q9Y5H9 948 aa17.31■□□□□ 0.36
SS18-216ENST00000580751 TCHHQ07283 1943 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 PITPNM1O00562 1244 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 CAND2O75155 1236 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 GADD45BO75293 160 aaPredicted RBP17.3■□□□□ 0.36
SS18-216ENST00000580751 C22orf31O95567 290 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 KLRC1P26715 233 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 TBC1D8BQ0IIM8 1120 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 HYIQ5T013 277 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 PLA2G4FQ68DD2 849 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 CCDC73Q6ZRK6 1079 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 RSPH3Q86UC2 560 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 RETREG2Q8NC44 543 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 RASSF8Q8NHQ8 419 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 CEP170P1Q96L14 293 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 JPH2Q9BR39 696 aaPredicted RBP17.3■□□□□ 0.36
SS18-216ENST00000580751 HIPK3Q9H422 1215 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 FAM13BQ9NYF5 915 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 KIAA1024Q9UPX6 916 aa17.3■□□□□ 0.36
SS18-216ENST00000580751 TRIP12Q14669 1992 aaPredicted RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 TMEM150BA6NC51 233 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 RAG1P15918 1043 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 RFC5P40937 340 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 FAM160A1Q05DH4 1040 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 RBL2Q08999 1139 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 ZRSR1Q15695 479 aaKnown RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 XKR9Q5GH70 373 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 RESP18Q5W5W9 173 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 SH3RF1Q7Z6J0 888 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 SLC7A3Q8WY07 619 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 DHX38Q92620 1227 aaKnown RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 SYMPKQ92797 1274 aaKnown RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 CLIC6Q96NY7 704 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 NOC4LQ9BVI4 516 aaKnown RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 CCSER1Q9C0I3 900 aa17.29■□□□□ 0.36
SS18-216ENST00000580751 DDX19AQ9NUU7 478 aaKnown RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 DBR1Q9UK59 544 aaKnown RBP17.29■□□□□ 0.36
SS18-216ENST00000580751 LOXHD1Q8IVV2 1947 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 SMIM35A0A1B0GVV1 85 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 TRIM43BA6NCK2 446 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 TMOD1P28289 359 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 RARRES1P49788 294 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 NPEPPSP55786 919 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 RUFY4Q6ZNE9 571 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 RPAINQ86UA6 219 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 GPT2Q8TD30 523 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 PIGOQ8TEQ8 1089 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms