RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 FAM167AQ96KS9 214 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 NIFKQ9BYG3 293 aaKnown RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 TRPV6Q9H1D0 765 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 DDX19AQ9NUU7 478 aaKnown RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 SEPT9Q9UHD8 586 aaPredicted RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 KIAA1024Q9UPX6 916 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 NRCAMQ92823 1304 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 KDM3AQ9Y4C1 1321 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 RRN3P2A6NIE6 340 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 ZBTB42B2RXF5 422 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 E9PMD0 336 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 TREHO43280 583 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 SLC26A4O43511 780 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 B4GALT4O60513 344 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 PQBP1O60828 265 aaKnown RBP9.57□□□□□ -0.88
NUP88-211ENST00000575976 XRCC6P12956 609 aaKnown RBP eCLIP9.57□□□□□ -0.88
NUP88-211ENST00000575976 KLRC1P26715 233 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 HOXC8P31273 242 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 NPEPPSP55786 919 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 TLE2Q04725 743 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 TARBP2Q15633 366 aaKnown RBP9.57□□□□□ -0.88
NUP88-211ENST00000575976 PTGISQ16647 500 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 MTERF2Q49AM1 385 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 TPRNQ4KMQ1 711 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 TMEM119Q4V9L6 283 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 XKR9Q5GH70 373 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 ZNF484Q5JVG2 852 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 MARCH8Q5T0T0 291 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 ADALQ6DHV7 355 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 OTUD6AQ7L8S5 288 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 ANKRD33Q7Z3H0 272 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 KCNK18Q7Z418 384 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 LRRC15Q8TF66 581 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 LMBR1Q8WVP7 490 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 CALML4Q96GE6 196 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 CDK5RAP3Q96JB5 506 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 CEP170P1Q96L14 293 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 NACC1Q96RE7 527 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 CEP89Q96ST8 783 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 SEZ6LQ9BYH1 1024 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 PANK2Q9BZ23 570 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 CYP26B1Q9NR63 512 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 ANKEF1Q9NU02 776 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 TRMT13Q9NUP7 481 aaKnown RBP9.57□□□□□ -0.88
NUP88-211ENST00000575976 ATP11BQ9Y2G3 1177 aa9.57□□□□□ -0.88
NUP88-211ENST00000575976 COL1A2P08123 1366 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 A0A087X0B3 334 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 CD4P01730 458 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 GNAT1P11488 350 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 CYP2C9P11712 490 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 PLCG1P19174 1290 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 KCNA4P22459 653 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 TXLNAP40222 546 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 RARRES1P49788 294 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 RESP18Q5W5W9 173 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 MTHFD1LQ6UB35 978 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 CLEC17AQ6ZS10 378 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 RASSF8Q8NHQ8 419 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 TOX2Q96NM4 488 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 CTAGE1Q96RT6 745 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 COL25A1Q9BXS0 654 aaPredicted RBP9.56□□□□□ -0.88
NUP88-211ENST00000575976 NT5C3AQ9H0P0 336 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 PRO3102Q9H379 93 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 CCDC39Q9UFE4 941 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 DBR1Q9UK59 544 aaKnown RBP9.56□□□□□ -0.88
NUP88-211ENST00000575976 DNM3Q9UQ16 869 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 TCHHQ07283 1943 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 MROH7Q68CQ1 1323 aa9.56□□□□□ -0.88
NUP88-211ENST00000575976 A0A1B0GVL5 298 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 MBLAC1A4D2B0 266 aaPredicted RBP9.55□□□□□ -0.88
NUP88-211ENST00000575976 DCDC2CA8MYV0 355 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 TLR3O15455 904 aaKnown RBP9.55□□□□□ -0.88
NUP88-211ENST00000575976 C22orf31O95567 290 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 EYA4O95677 639 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 CMA1P23946 247 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 FAAP100Q0VG06 881 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 CSPP1Q1MSJ5 1256 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 RRAGBQ5VZM2 374 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 RUFY4Q6ZNE9 571 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 KCTD17Q8N5Z5 321 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 PDILTQ8N807 584 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 DHX38Q92620 1227 aaKnown RBP9.55□□□□□ -0.88
NUP88-211ENST00000575976 WNT8BQ93098 351 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 BHMT2Q9H2M3 363 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 BMP2KQ9NSY1 1161 aaPredicted RBP9.55□□□□□ -0.88
NUP88-211ENST00000575976 BLOC1S4Q9NUP1 217 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 FAM13BQ9NYF5 915 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 TUBE1Q9UJT0 475 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 NOD1Q9Y239 953 aa9.55□□□□□ -0.88
NUP88-211ENST00000575976 WDR81Q562E7 1941 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 MYH9P35579 1960 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 IGKV6-21A0A0C4DH24 114 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 A0A1W2PQ27 194 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 A0A1W2PQ64 194 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 A0A1W2PQD8 194 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 ARHGEF35A5YM69 484 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 MAGEB2O15479 319 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 POLR2DO15514 142 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 USO1O60763 962 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 GADD45BO75293 160 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms