RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PTPN14Q15678 1187 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 SOWAHCQ53LP3 525 aaPredicted RBP18.94■□□□□ 0.62
VPS53-218ENST00000575207 TRIM50Q86XT4 487 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 MCF2L2Q86YR7 1114 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 SLC22A17Q8WUG5 538 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 SHDQ96IW2 340 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 FAM126AQ9BYI3 521 aaPredicted RBP18.94■□□□□ 0.62
VPS53-218ENST00000575207 SFXN1Q9H9B4 322 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 EPS15L1Q9UBC2 864 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 MIA3Q5JRA6 1907 aa18.94■□□□□ 0.62
VPS53-218ENST00000575207 TSPY2A6NKD2 308 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 NOP56O00567 594 aaKnown RBP18.93■□□□□ 0.62
VPS53-218ENST00000575207 RPLP2P05387 115 aaKnown RBP18.93■□□□□ 0.62
VPS53-218ENST00000575207 SLC3A2P08195 630 aaKnown RBP18.93■□□□□ 0.62
VPS53-218ENST00000575207 HSPD1P10809 573 aaKnown RBP18.93■□□□□ 0.62
VPS53-218ENST00000575207 ATP5JP18859 108 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 MAGEA9P43362 315 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 LIMK1P53667 647 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 CABP7Q86V35 215 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 RHPN1Q8TCX5 695 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 GLG1Q92896 1179 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 DDX23Q9BUQ8 820 aaKnown RBP18.93■□□□□ 0.62
VPS53-218ENST00000575207 OSBPL6Q9BZF3 934 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 BCAS3Q9H6U6 928 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 C1orf115Q9H7X2 142 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 RAB23Q9ULC3 237 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 TNNQ9UQP3 1299 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 ABCB11O95342 1321 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 IGSF9BQ9UPX0 1349 aa18.93■□□□□ 0.62
VPS53-218ENST00000575207 GNAT2P19087 354 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 PAK2Q13177 524 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 IER5Q5VY09 327 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 C15orf39Q6ZRI6 1047 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 VSIG10LQ86VR7 867 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 TRMT2AQ8IZ69 625 aaKnown RBP18.92■□□□□ 0.62
VPS53-218ENST00000575207 CLASRPQ8N2M8 674 aaKnown RBP18.92■□□□□ 0.62
VPS53-218ENST00000575207 PDCD2LQ9BRP1 358 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 SPG21Q9NZD8 308 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 TUBE1Q9UJT0 475 aa18.92■□□□□ 0.62
VPS53-218ENST00000575207 KANSL1LA0AUZ9 987 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 PDHBP11177 359 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 LRRC55Q6ZSA7 311 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 IFNL3Q8IZI9 196 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 FAM9BQ8IZU0 186 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 CELF5Q8N6W0 485 aaKnown RBP18.91■□□□□ 0.62
VPS53-218ENST00000575207 GPKOWQ92917 476 aaPredicted RBP eCLIP18.91■□□□□ 0.62
VPS53-218ENST00000575207 OSBP2Q969R2 916 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 ZNF558Q96NG5 402 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.91■□□□□ 0.62
VPS53-218ENST00000575207 IRAK3Q9Y616 596 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 AKAP13Q12802 2813 aa18.91■□□□□ 0.62
VPS53-218ENST00000575207 CYSRT1A8MQ03 144 aa18.9■□□□□ 0.62
VPS53-218ENST00000575207 CXCL14O95715 111 aa18.9■□□□□ 0.62
VPS53-218ENST00000575207 IFIT2P09913 472 aaKnown RBP18.9■□□□□ 0.62
VPS53-218ENST00000575207 ZNF543Q08ER8 600 aa18.9■□□□□ 0.62
VPS53-218ENST00000575207 BMS1Q14692 1282 aaKnown RBP18.9■□□□□ 0.62
VPS53-218ENST00000575207 METTL7BQ6UX53 244 aa18.9■□□□□ 0.62
VPS53-218ENST00000575207 PRMT8Q9NR22 394 aaPredicted RBP18.9■□□□□ 0.62
VPS53-218ENST00000575207 C1orf112Q9NSG2 853 aa18.9■□□□□ 0.62
VPS53-218ENST00000575207 C9IYK1 514 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 PATL2C9JE40 543 aaKnown RBP18.89■□□□□ 0.61
VPS53-218ENST00000575207 IPO8O15397 1037 aaKnown RBP18.89■□□□□ 0.61
VPS53-218ENST00000575207 MGEA5O60502 916 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 APPP05067 770 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 MYCLP12524 364 aaPredicted RBP18.89■□□□□ 0.61
VPS53-218ENST00000575207 IBSPP21815 317 aaPredicted RBP18.89■□□□□ 0.61
VPS53-218ENST00000575207 PBX3P40426 434 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 PPARAQ07869 468 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 LPAL2Q16609 132 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 MARCH8Q5T0T0 291 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 TSSK4Q6SA08 328 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 SLC24A5Q71RS6 500 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 RGS18Q9NS28 235 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 WASF3Q9UPY6 502 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 TRPV2Q9Y5S1 764 aa18.89■□□□□ 0.61
VPS53-218ENST00000575207 C2orf16Q68DN1 1984 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 GPAA1O43292 621 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 TOP1P11387 765 aaKnown RBP18.88■□□□□ 0.61
VPS53-218ENST00000575207 GBP2P32456 591 aaPredicted RBP18.88■□□□□ 0.61
VPS53-218ENST00000575207 PPFIA1Q13136 1202 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 HSP90AB4PQ58FF6 505 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 SLC39A11Q8N1S5 342 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 CLUAP1Q96AJ1 413 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 TMEM47Q9BQJ4 181 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 TMEM117Q9H0C3 514 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 MTF2Q9Y483 593 aaPredicted RBP18.88■□□□□ 0.61
VPS53-218ENST00000575207 DOCK8Q8NF50 2099 aa18.88■□□□□ 0.61
VPS53-218ENST00000575207 KCNK5O95279 499 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 SNHG28P0DPA3 235 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 FGFR1P11362 822 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 GHRHRQ02643 423 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 GIT2Q14161 759 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 GRIK4Q16099 956 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 UTP14CQ5TAP6 766 aaKnown RBP18.87■□□□□ 0.61
VPS53-218ENST00000575207 APPBP2Q92624 585 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 STAMQ92783 540 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 GATA6Q92908 595 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 MYL10Q9BUA6 226 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 ELAC1Q9H777 363 aaKnown RBP18.87■□□□□ 0.61
VPS53-218ENST00000575207 RXFP3Q9NSD7 469 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms