RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ACRBPQ8NEB7 543 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 CCDC47Q96A33 483 aaKnown RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 ZBTB10Q96DT7 871 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 TRIM44Q96DX7 344 aaPredicted RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 IL25Q9H293 177 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ANTXR1Q9H6X2 564 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 AGO4Q9HCK5 861 aaKnown RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 LATS2Q9NRM7 1088 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 CEP131Q9UPN4 1083 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 DNM3Q9UQ16 869 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 KCNMB2Q9Y691 235 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 SLC4A7Q9Y6M7 1214 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 AOX1Q06278 1338 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 A6NNZ2 444 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 FAM155AB1AL88 458 aaPredicted RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 H7C1D1 291 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 TOR1BO14657 336 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 GLRX3O76003 335 aaKnown RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 ATE1O95260 518 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 IL2RAP01589 272 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 PYGMP11217 842 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 RPS12P25398 132 aaKnown RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 IRX3P78415 501 aaPredicted RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 MMRN1Q13201 1228 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 LMBRD2Q68DH5 695 aaPredicted RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 SPOCD1Q6ZMY3 1216 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 CMTR2Q8IYT2 770 aaKnown RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 NSUN6Q8TEA1 469 aaKnown RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 RILPL2Q969X0 211 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 NECAB3Q96P71 396 aaPredicted RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 WDR12Q9GZL7 423 aaKnown RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 POLLQ9UGP5 575 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 NSFL1CQ9UNZ2 370 aaKnown RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 USP20Q9Y2K6 914 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 PCDHB5Q9Y5E4 795 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 COL1A1P02452 1464 aaPredicted RBP7.83□□□□□ -1.16
VPS53-217ENST00000575100 ZNF804BA4D1E1 1349 aa7.83□□□□□ -1.16
VPS53-217ENST00000575100 hCG_1642624A0A1W2PR95 340 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 TPP1O14773 563 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 PLOD3O60568 738 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 CD4P01730 458 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 PCBP2Q15366 365 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS53-217ENST00000575100 DOK7Q18PE1 504 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 RETSATQ6NUM9 610 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 SWSAP1Q6NVH7 229 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 LAPTM4BQ86VI4 370 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 SCUBE1Q8IWY4 988 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 FAM84BQ96KN1 310 aaPredicted RBP7.82□□□□□ -1.16
VPS53-217ENST00000575100 SPSB2Q99619 263 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 MIR1-1HGQ9H1L0 117 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 TMPRSS4Q9NRS4 437 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 PCDHB14Q9Y5E9 798 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 PAPPA2Q9BXP8 1791 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 XDHP47989 1333 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 A0A1W2PQU0 124 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 MEIS3P2A8K0S8 358 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 PSMD14O00487 310 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 KHNYNO15037 678 aaKnown RBP7.82□□□□□ -1.16
VPS53-217ENST00000575100 PAGE1O75459 146 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 MT-CO1P00395 513 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 HUNKP57058 714 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 KRT85P78386 507 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 ODF1Q14990 250 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 GPATCH4Q5T3I0 446 aaKnown RBP7.82□□□□□ -1.16
VPS53-217ENST00000575100 RGMBQ6NW40 437 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 GPR155Q7Z3F1 870 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 RPAINQ86UA6 219 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 LSMEM1Q8N8F7 131 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 SLC7A14Q8TBB6 771 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 SLC35G2Q8TBE7 412 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 TBC1D16Q8TBP0 767 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 HSPBAP1Q96EW2 488 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 TAAR9Q96RI9 348 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 HAUS7Q99871 368 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 ANKRD2Q9GZV1 360 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 ARHGAP28Q9P2N2 729 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 TMCC3Q9ULS5 477 aa7.82□□□□□ -1.16
VPS53-217ENST00000575100 GTPBP10A4D1E9 387 aaKnown RBP7.81□□□□□ -1.16
VPS53-217ENST00000575100 UFL1O94874 794 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 CYP2E1P05181 493 aaPredicted RBP7.81□□□□□ -1.16
VPS53-217ENST00000575100 PYGLP06737 847 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 PLA2G4AP47712 749 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 KRT83P78385 493 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 CCDC158Q5M9N0 1113 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 TTC39AQ5SRH9 613 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 FAAH2Q6GMR7 532 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 NYAP1Q6ZVC0 841 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 EGFL6Q8IUX8 553 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 ZNF713Q8N859 430 aaPredicted RBP7.81□□□□□ -1.16
VPS53-217ENST00000575100 KCT2Q8NC54 265 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 NUP133Q8WUM0 1156 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 HVCN1Q96D96 273 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 CCDC138Q96M89 665 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 ZIC5Q96T25 663 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 EYA3Q99504 573 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 SLC4A5Q9BY07 1137 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 MYLK2Q9H1R3 596 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 GBA2Q9HCG7 927 aaPredicted RBP7.81□□□□□ -1.16
VPS53-217ENST00000575100 HMG20BQ9P0W2 317 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms