RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ANKIB1Q9P2G1 1089 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 USP17L3A6NCW0 530 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 USP17L4A6NCW7 530 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PGRMC1O00264 195 aaKnown RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 TRAF5O00463 557 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 ZNF263O14978 683 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PRPF3O43395 683 aaKnown RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 HSPA9P38646 679 aaKnown RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 ALDH5A1P51649 535 aaPredicted RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 ICA1Q05084 483 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 LAMB3Q13751 1172 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 KLHDC7AQ5VTJ3 777 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 ANKRD40Q6AI12 368 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 USP17L1Q7RTZ2 530 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 LONP2Q86WA8 852 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 CD302Q8IX05 232 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 MAB21L3Q8N8X9 362 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 CCT6BQ92526 530 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PAGR1Q9BTK6 254 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 STMN4Q9H169 189 aaPredicted RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PLAGL2Q9UPG8 496 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 RASA1P20936 1047 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 PRPHP41219 470 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 RAD23BP54727 409 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ERVK-9P63128 1117 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 SETDB1Q15047 1291 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ANKRD20A2Q5SQ80 823 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ANKRD20A1Q5TYW2 823 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ANKRD20A3Q5VUR7 823 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ERICH1Q86X53 443 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 SPICE1Q8N0Z3 855 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 CALML4Q96GE6 196 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 CRAMP1Q96RY5 1269 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 DDX23Q9BUQ8 820 aaKnown RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ISCUQ9H1K1 167 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 DISC1Q9NRI5 854 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 CNOT8Q9UFF9 292 aaKnown RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 PCDHAC2Q9Y5I4 1007 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 RBBP6Q7Z6E9 1792 aaKnown RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 FLT1P17948 1338 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 DCDC2CA8MYV0 355 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 SEPT2Q15019 361 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 VWA3BQ502W6 1294 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 AGBL2Q5U5Z8 902 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 MIS18BP1Q6P0N0 1132 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 CNNM4Q6P4Q7 775 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 OTUD6AQ7L8S5 288 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 VPS36Q86VN1 386 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 IRF2BP1Q8IU81 584 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 C4orf32Q8N8J7 132 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 LRRC15Q8TF66 581 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 HPS3Q969F9 1004 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 FAM163AQ96GL9 167 aaPredicted RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 LSM14BQ9BX40 385 aaKnown RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ZCWPW1Q9H0M4 648 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 DDX4Q9NQI0 724 aaKnown RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 KLHL14Q9P2G3 628 aa10.4□□□□□ -0.74
CCDC40-212ENST00000574799 ARPP21Q9UBL0 812 aaPredicted RBP10.4□□□□□ -0.74
CCDC40-212ENST00000574799 SPDYE3A6NKU9 549 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 PLSCR1O15162 318 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 KLRC1P26715 233 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 PDE6CP51160 858 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 CRELD2Q6UXH1 353 aaPredicted RBP10.4□□□□□ -0.75
CCDC40-212ENST00000574799 TAOK1Q7L7X3 1001 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 IQCDQ96DY2 449 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 NAF1Q96HR8 494 aaKnown RBP10.4□□□□□ -0.75
CCDC40-212ENST00000574799 AZI2Q9H6S1 392 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 ABCF3Q9NUQ8 709 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 MYH7BA7E2Y1 1941 aa10.4□□□□□ -0.75
CCDC40-212ENST00000574799 SMCHD1A6NHR9 2005 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 PCP11498 1178 aaKnown RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 DRD4P21917 467 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 LONP1P36776 959 aaKnown RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 ATP2C1P98194 919 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 ADCY1Q08828 1119 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 ASIC2Q16515 512 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 TCERG1LQ5VWI1 586 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 TLDC1Q6P9B6 456 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 USP38Q8NB14 1042 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 ETNK1Q9HBU6 452 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 GRID2IPA4D2P6 1211 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 TTI1O43156 1089 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 UFL1O94874 794 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 FCER1AP12319 257 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 FERP16591 822 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 MREGQ8N565 214 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 ZNF507Q8TCN5 953 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 NEK9Q8TD19 979 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 LBHD1Q9BQE6 289 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 MTRF1LQ9UGC7 380 aaKnown RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 CETN3O15182 167 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 TNFRSF8P28908 595 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 RPS6KA3P51812 740 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 EIF3BP55884 814 aaKnown RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 GABPAQ06546 454 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 MAN2A1Q16706 1144 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 RASIP1Q5U651 963 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 CABP7Q86V35 215 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 FAM133AQ8N9E0 248 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms