RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 RUFY4Q6ZNE9 571 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 BARGINQ6ZT62 677 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 DDX20Q9UHI6 824 aaKnown RBP19.03■□□□□ 0.64
SCARF1-205ENST00000571272 SERPINB13Q9UIV8 391 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 MAGOHP61326 146 aaKnown RBP19.03■□□□□ 0.64
SCARF1-205ENST00000571272 PRPF4BQ13523 1007 aaKnown RBP19.03■□□□□ 0.64
SCARF1-205ENST00000571272 QRICH1Q2TAL8 776 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 CCDC13Q8IYE1 715 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 GPATCH11Q8N954 259 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 EIF1ADQ8N9N8 165 aaKnown RBP19.03■□□□□ 0.64
SCARF1-205ENST00000571272 MAGOHBQ96A72 148 aaKnown RBP19.03■□□□□ 0.64
SCARF1-205ENST00000571272 TRIM51Q9BSJ1 452 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 SIX2Q9NPC8 291 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 PITPNM2Q9BZ72 1349 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 PLIN4Q96Q06 1357 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 SFI1A8K8P3 1242 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 C6orf229H3BNL8 230 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 COPB2P35606 906 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 PRKCIP41743 596 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 KRT71Q3SY84 523 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 C15orf52Q6ZUT6 534 aaKnown RBP19.03■□□□□ 0.64
SCARF1-205ENST00000571272 NT5DC3Q86UY8 548 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 VPS36Q86VN1 386 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 YY1AP1Q9H869 796 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 POLLQ9UGP5 575 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 DNM3Q9UQ16 869 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 CCDC188H7C350 402 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 FGGP02679 453 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 NR3C1P04150 777 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 ABCB4P21439 1286 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 GALCP54803 685 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 SNAP25P60880 206 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 PPP2R2AP63151 447 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 ACTN3Q08043 901 aaPredicted RBP19.02■□□□□ 0.64
SCARF1-205ENST00000571272 C6orf89Q6UWU4 347 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 TMC3Q7Z5M5 1100 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 SLC35C1Q96A29 364 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 VCPKMTQ9H867 229 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 STXBP5LQ9Y2K9 1186 aa19.02■□□□□ 0.64
SCARF1-205ENST00000571272 TRAPPC3O43617 180 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 CALUO43852 315 aaPredicted RBP19.02■□□□□ 0.63
SCARF1-205ENST00000571272 GCNT3O95395 438 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 SPRED3Q2MJR0 410 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 GPATCH4Q5T3I0 446 aaKnown RBP19.02■□□□□ 0.63
SCARF1-205ENST00000571272 CCDC121Q6ZUS5 278 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 CCDC26Q8TAB7 109 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 LMBR1Q8WVP7 490 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 ATP8A1Q9Y2Q0 1164 aa19.02■□□□□ 0.63
SCARF1-205ENST00000571272 ATP2B4P23634 1241 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 BIRC3Q13489 604 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 SLFN11Q7Z7L1 901 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 P2RX7Q99572 595 aaKnown RBP19.01■□□□□ 0.63
SCARF1-205ENST00000571272 JPH2Q9BR39 696 aaPredicted RBP19.01■□□□□ 0.63
SCARF1-205ENST00000571272 CD248Q9HCU0 757 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 SUCLA2Q9P2R7 463 aaPredicted RBP19.01■□□□□ 0.63
SCARF1-205ENST00000571272 SWAP70Q9UH65 585 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 RIMBP2O15034 1052 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 ATP2C2O75185 946 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 SPATA31C1P0DKV0 1188 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 SHMT1P34896 483 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 SETQ01105 290 aaPredicted RBP19.01■□□□□ 0.63
SCARF1-205ENST00000571272 GLYCTKQ8IVS8 523 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 RAPGEF5Q92565 580 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 BHMT2Q9H2M3 363 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 UTP11Q9Y3A2 253 aaKnown RBP19.01■□□□□ 0.63
SCARF1-205ENST00000571272 COL24A1Q17RW2 1714 aa19.01■□□□□ 0.63
SCARF1-205ENST00000571272 ARFGEF1Q9Y6D6 1849 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 BHMG1C9JSJ3 638 aaPredicted RBP19■□□□□ 0.63
SCARF1-205ENST00000571272 PDXKO00764 312 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 BUB1BO60566 1050 aaPredicted RBP19■□□□□ 0.63
SCARF1-205ENST00000571272 JAM2P57087 298 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 SPIRE1Q08AE8 756 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 MTMR3Q13615 1198 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 SHROOM1Q2M3G4 852 aaPredicted RBP19■□□□□ 0.63
SCARF1-205ENST00000571272 RASGEF1CQ8N431 466 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 LNX1Q8TBB1 728 aaPredicted RBP19■□□□□ 0.63
SCARF1-205ENST00000571272 MDM1Q8TC05 714 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 NCAPGQ9BPX3 1015 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 AMFRQ9UKV5 643 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 ASTN1O14525 1302 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 NHSQ6T4R5 1651 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 GOLGA6L7A0A1B0GV03 622 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 EVI5O60447 810 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 IFFO1Q0D2I5 559 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 EPM2AIP1Q7L775 607 aaPredicted RBP19■□□□□ 0.63
SCARF1-205ENST00000571272 SLFN12Q8IYM2 578 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 SYT2Q8N9I0 419 aaPredicted RBP19■□□□□ 0.63
SCARF1-205ENST00000571272 CCDC114Q96M63 670 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 MXD3Q9BW11 206 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 SLITRK6Q9H5Y7 841 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 PPP1R9AQ9ULJ8 1098 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 NENFQ9UMX5 172 aa19■□□□□ 0.63
SCARF1-205ENST00000571272 PHF20L1A8MW92 1017 aa18.99■□□□□ 0.63
SCARF1-205ENST00000571272 TAL1P17542 331 aaPredicted RBP18.99■□□□□ 0.63
SCARF1-205ENST00000571272 ARHGAP4P98171 946 aa18.99■□□□□ 0.63
SCARF1-205ENST00000571272 SF3A3Q12874 501 aaKnown RBP eCLIP18.99■□□□□ 0.63
SCARF1-205ENST00000571272 PRR5LQ6MZQ0 368 aa18.99■□□□□ 0.63
SCARF1-205ENST00000571272 CCDC91Q7Z6B0 441 aa18.99■□□□□ 0.63
SCARF1-205ENST00000571272 TBC1D22AQ8WUA7 517 aa18.99■□□□□ 0.63
SCARF1-205ENST00000571272 HES6Q96HZ4 224 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms