RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MUTP22033 750 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 CMA1P23946 247 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 YWHABP31946 246 aaKnown RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 CCT6AP40227 531 aaKnown RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 ME1P48163 572 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 RARRES1P49788 294 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 ATN1P54259 1190 aaPredicted RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 GRIK4Q16099 956 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 BRDTQ58F21 947 aaPredicted RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 XKR3Q5GH77 459 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 FAM160B1Q5W0V3 765 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 RUFY4Q6ZNE9 571 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 ANKRD33Q7Z3H0 272 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 CABP7Q86V35 215 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 TPH2Q8IWU9 490 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 ENGASEQ8NFI3 743 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 BBXQ8WY36 941 aaPredicted RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 ATP6V0A1Q93050 837 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 VWCEQ96DN2 955 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 GLT1D1Q96MS3 346 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 OSBPL7Q9BZF2 842 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 TRPV6Q9H1D0 765 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 DDX19AQ9NUU7 478 aaKnown RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 KIAA1024Q9UPX6 916 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 COL1A2P08123 1366 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 TREHO43280 583 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 SLC26A4O43511 780 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 HBP1O60381 514 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 PFKFB1P16118 471 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 ITGB8P26012 769 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 SLC12A3P55017 1021 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 TLE2Q04725 743 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 PTPN11Q06124 597 aaPredicted RBP10.39□□□□□ -0.75
VPS35-211ENST00000569950 FAAP100Q0VG06 881 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 PPFIA1Q13136 1202 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 MAPK7Q13164 816 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 DRP2Q13474 957 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 SNW1Q13573 536 aaKnown RBP10.39□□□□□ -0.75
VPS35-211ENST00000569950 TRIM60Q495X7 471 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 ARSHQ5FYA8 562 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 NECAB2Q7Z6G3 386 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 SERINC5Q86VE9 423 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 DAW1Q8N136 415 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 PLIN2Q99541 437 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 KATNAL1Q9BW62 490 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 DHX33Q9H6R0 707 aaKnown RBP10.39□□□□□ -0.75
VPS35-211ENST00000569950 AZI2Q9H6S1 392 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 CYP26B1Q9NR63 512 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 ANKEF1Q9NU02 776 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 LMBRD1Q9NUN5 540 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 DBR1Q9UK59 544 aaKnown RBP10.39□□□□□ -0.75
VPS35-211ENST00000569950 TBX21Q9UL17 535 aa10.39□□□□□ -0.75
VPS35-211ENST00000569950 ZNF215Q9UL58 517 aaPredicted RBP10.39□□□□□ -0.75
VPS35-211ENST00000569950 NRCAMQ92823 1304 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 A0A1B0GVL5 298 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 DDX11L8A8MPP1 907 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 ACTN4O43707 911 aaKnown RBP10.38□□□□□ -0.75
VPS35-211ENST00000569950 MAFO75444 373 aaPredicted RBP10.38□□□□□ -0.75
VPS35-211ENST00000569950 EYA4O95677 639 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 XRCC6P12956 609 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS35-211ENST00000569950 LIG1P18858 919 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 UBA7P41226 1012 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 RGS19P49795 217 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 NDUFA8P51970 172 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 RTP1P59025 263 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 RBL2Q08999 1139 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 GPNMBQ14956 572 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 ZNF484Q5JVG2 852 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 KRT79Q5XKE5 535 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 HAUS3Q68CZ6 603 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 MTHFD1LQ6UB35 978 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 TRMT1LQ7Z2T5 733 aaKnown RBP10.38□□□□□ -0.75
VPS35-211ENST00000569950 SH3RF1Q7Z6J0 888 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 RAD54LQ92698 747 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 FAM167AQ96KS9 214 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 TOX2Q96NM4 488 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 NACC1Q96RE7 527 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 RUSC1Q9BVN2 902 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 PANK2Q9BZ23 570 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 RAB34Q9BZG1 259 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 SEPT9Q9UHD8 586 aaPredicted RBP10.38□□□□□ -0.75
VPS35-211ENST00000569950 TRPC6Q9Y210 931 aa10.38□□□□□ -0.75
VPS35-211ENST00000569950 UMODL1Q5DID0 1318 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 KDM3AQ9Y4C1 1321 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 PTPRSQ13332 1948 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 C17orf102A2RUQ5 167 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 TRIM43BA6NCK2 446 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 CYP2C9P11712 490 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 KLRC1P26715 233 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 MBTPS1Q14703 1052 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 MTERF2Q49AM1 385 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 RINT1Q6NUQ1 792 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 C1orf186Q6ZWK4 172 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 KIAA0319LQ8IZA0 1049 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 FMR1NBQ8N0W7 255 aaPredicted RBP10.37□□□□□ -0.75
VPS35-211ENST00000569950 KCTD17Q8N5Z5 321 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 C7orf31Q8N865 590 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 SYT2Q8N9I0 419 aaPredicted RBP10.37□□□□□ -0.75
VPS35-211ENST00000569950 FSIP1Q8NA03 581 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 ERMNQ8TAM6 284 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms