RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PIK3AP1Q6ZUJ8 805 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 NLRX1Q86UT6 975 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 CCDC12Q8WUD4 166 aaPredicted RBP15.76■□□□□ 0.11
CLN3-235ENST00000568497 MAF1Q9H063 256 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 AGO4Q9HCK5 861 aaKnown RBP15.76■□□□□ 0.11
CLN3-235ENST00000568497 KCNH7Q9NS40 1196 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 COL4A6Q14031 1691 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 IGLV3-22A0A075B6J6 115 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 BTBD18B2RXH4 712 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 ATP2B1P20020 1258 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 MARK3P27448 753 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 GNPTABQ3T906 1256 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 CEP55Q53EZ4 464 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 CRYGNQ8WXF5 182 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 WNT8BQ93098 351 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 C11orf84Q9BUA3 381 aaPredicted RBP15.75■□□□□ 0.11
CLN3-235ENST00000568497 IFIH1Q9BYX4 1025 aaKnown RBP15.75■□□□□ 0.11
CLN3-235ENST00000568497 ALG13Q9NP73 1137 aaKnown RBP15.75■□□□□ 0.11
CLN3-235ENST00000568497 SH3GLB2Q9NR46 395 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 TRPC6Q9Y210 931 aa15.75■□□□□ 0.11
CLN3-235ENST00000568497 FAM186AA6NE01 2351 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 GSTTP1A0A1W2PQM5 241 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 PRR23AA6NEV1 266 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 GRM6O15303 877 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 FOSP01100 380 aaPredicted RBP15.74■□□□□ 0.11
CLN3-235ENST00000568497 THPOP40225 353 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 PSEN2P49810 448 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 LAMC2Q13753 1193 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 DGKDQ16760 1214 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 TRMT1LQ7Z2T5 733 aaKnown RBP15.74■□□□□ 0.11
CLN3-235ENST00000568497 FIBCD1Q8N539 461 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 TOP1MTQ969P6 601 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 LENG9Q96B70 501 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 GPRASP2Q96D09 838 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 ZSCAN31Q96LW9 406 aaPredicted RBP15.74■□□□□ 0.11
CLN3-235ENST00000568497 GPR20Q99678 358 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 KATNAL1Q9BW62 490 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 LMAN2LQ9H0V9 348 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 EHMT1Q9H9B1 1298 aa15.74■□□□□ 0.11
CLN3-235ENST00000568497 RIF1Q5UIP0 2472 aaKnown RBP15.74■□□□□ 0.11
CLN3-235ENST00000568497 RSPH10B2B2RC85 870 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 MEIS1O00470 390 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 SLC37A4O43826 429 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 CCNE2O96020 404 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 LGALS2P05162 132 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 RSPH10BP0C881 870 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 MFSD10Q14728 455 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 KIAA0753Q2KHM9 967 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 LETM2Q2VYF4 491 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 METTL7BQ6UX53 244 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 DAGLBQ8NCG7 672 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 PPTC7Q8NI37 304 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 SEPT8Q92599 483 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 RPGRIP1Q96KN7 1286 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 PCYT2Q99447 389 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 C16orf70Q9BSU1 422 aa15.73■□□□□ 0.11
CLN3-235ENST00000568497 LOC730098B7Z3J9 87 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 PROB1E7EW31 1015 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 HAS3O00219 553 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 NOP56O00567 594 aaKnown RBP15.72■□□□□ 0.11
CLN3-235ENST00000568497 KRT2P35908 639 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 NBR1Q14596 966 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 PLEKHG4Q58EX7 1191 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 XRRA1Q6P2D8 792 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 DIS3L2Q8IYB7 885 aaKnown RBP15.72■□□□□ 0.11
CLN3-235ENST00000568497 BICD2Q8TD16 824 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 TNFRSF25Q93038 417 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 PPP2R3CQ969Q6 453 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 C8orf76Q96K31 380 aa15.72■□□□□ 0.11
CLN3-235ENST00000568497 SH2B1Q9NRF2 756 aaPredicted RBP15.72■□□□□ 0.11
CLN3-235ENST00000568497 C5orf67F2Z3F1 127 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 MSH4O15457 936 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 CHMP2AO43633 222 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 STAM2O75886 525 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 MMP1P03956 469 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 RB1P06400 928 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 CYP3A4P08684 503 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 TCF7P36402 384 aaPredicted RBP15.71■□□□□ 0.11
CLN3-235ENST00000568497 NEDD9Q14511 834 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 NONOQ15233 471 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLN3-235ENST00000568497 ZBTB33Q86T24 672 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 SPRYD3Q8NCJ5 442 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 EMID1Q96A84 441 aaPredicted RBP15.71■□□□□ 0.11
CLN3-235ENST00000568497 ZNF577Q9BSK1 485 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 GLT8D2Q9H1C3 349 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 RWDD3Q9Y3V2 267 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 MYO15AQ9UKN7 3530 aa15.71■□□□□ 0.11
CLN3-235ENST00000568497 CACNA1BQ00975 2339 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 CCDC194A0A1B0GVG4 234 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 DHX15O43143 795 aaKnown RBP15.7■□□□□ 0.1
CLN3-235ENST00000568497 EYA4O95677 639 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 F2P00734 622 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 CTSHP09668 335 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 TGFB3P10600 412 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 GJB2P29033 226 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 BMPR1AP36894 532 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 ACTR2P61160 394 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 ADAM15Q13444 863 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 CBX2Q14781 532 aaPredicted RBP15.7■□□□□ 0.1
CLN3-235ENST00000568497 KCNV1Q6PIU1 500 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms