RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CHRDL2Q6WN34 429 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 C16orf59Q7L2K0 433 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 C4orf19Q8IY42 314 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 DNAJB3Q8WWF6 145 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 MMTAG2Q9BU76 263 aaKnown RBP21.91■■□□□ 1.1
CLN3-225ENST00000566824 FAM49AQ9H0Q0 323 aaPredicted RBP21.91■■□□□ 1.1
CLN3-225ENST00000566824 PRO3102Q9H379 93 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 PCDHA2Q9Y5H9 948 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 RANBP2P49792 3224 aaKnown RBP21.9■■□□□ 1.1
CLN3-225ENST00000566824 PITPNM1O00562 1244 aa21.9■■□□□ 1.1
CLN3-225ENST00000566824 CTSHP09668 335 aa21.9■■□□□ 1.1
CLN3-225ENST00000566824 IQCF3P0C7M6 154 aa21.9■■□□□ 1.1
CLN3-225ENST00000566824 MARCKSP29966 332 aaPredicted RBP21.9■■□□□ 1.1
CLN3-225ENST00000566824 PDIA5Q14554 519 aa21.9■■□□□ 1.1
CLN3-225ENST00000566824 POTEGQ6S5H5 508 aa21.9■■□□□ 1.1
CLN3-225ENST00000566824 LBHD1Q9BQE6 289 aaPredicted RBP21.9■■□□□ 1.1
CLN3-225ENST00000566824 ZSWIM4Q9H7M6 989 aa21.9■■□□□ 1.1
CLN3-225ENST00000566824 TCHHQ07283 1943 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 ACRP10323 421 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 SELPP16109 830 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 FPGSQ05932 587 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 BFSP2Q13515 415 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 ARL6IP4Q66PJ3 421 aaKnown RBP21.89■■□□□ 1.1
CLN3-225ENST00000566824 LRRC8DQ7L1W4 858 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 LINC01465Q8N7H1 131 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 CAGE1Q8TC20 777 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 PIGOQ8TEQ8 1089 aa21.89■■□□□ 1.1
CLN3-225ENST00000566824 POLR3CQ9BUI4 534 aaPredicted RBP21.89■■□□□ 1.1
CLN3-225ENST00000566824 LYPLA2O95372 231 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 YWHABP31946 246 aaKnown RBP21.88■■□□□ 1.09
CLN3-225ENST00000566824 CCT6AP40227 531 aaKnown RBP21.88■■□□□ 1.09
CLN3-225ENST00000566824 TMEM62Q0P6H9 643 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 MKRN4PQ13434 485 aaPredicted RBP21.88■■□□□ 1.09
CLN3-225ENST00000566824 DRP2Q13474 957 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 TCTN1Q2MV58 587 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 KIAA0319LQ8IZA0 1049 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 LRRC71Q8N4P6 559 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 RETREG2Q8NC44 543 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 NEK9Q8TD19 979 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 TNPO1Q92973 898 aaKnown RBP21.88■■□□□ 1.09
CLN3-225ENST00000566824 TUFT1Q9NNX1 390 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 TSHZ2Q9NRE2 1034 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 FBXO2Q9UK22 296 aaPredicted RBP21.88■■□□□ 1.09
CLN3-225ENST00000566824 COLQQ9Y215 455 aaPredicted RBP21.88■■□□□ 1.09
CLN3-225ENST00000566824 TRIOBPQ9H2D6 2365 aa21.88■■□□□ 1.09
CLN3-225ENST00000566824 NBNO60934 754 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 CHRNA1P02708 482 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 PDIA4P13667 645 aaKnown RBP21.87■■□□□ 1.09
CLN3-225ENST00000566824 RPA1P27694 616 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 NASPP49321 788 aaPredicted RBP21.87■■□□□ 1.09
CLN3-225ENST00000566824 CLCN3P51790 818 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 SLC39A14Q15043 492 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 DEFB128Q7Z7B8 93 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 TMEM199Q8N511 208 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 CCDC155Q8N6L0 562 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 SNX29Q8TEQ0 813 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 CLIC6Q96NY7 704 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 CYP26B1Q9NR63 512 aa21.87■■□□□ 1.09
CLN3-225ENST00000566824 BMP2KQ9NSY1 1161 aaPredicted RBP21.87■■□□□ 1.09
CLN3-225ENST00000566824 SMIM35A0A1B0GVV1 85 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 BMP15O95972 392 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 DNM1Q05193 864 aaKnown RBP21.86■■□□□ 1.09
CLN3-225ENST00000566824 MGAT3Q09327 533 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 C9orf50Q5SZB4 431 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 EFCAB12Q6NXP0 572 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 TAF2Q6P1X5 1199 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 USP49Q70CQ1 688 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 RPAINQ86UA6 219 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 METTL13Q8N6R0 699 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 ERMNQ8TAM6 284 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 CEP170P1Q96L14 293 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 PNMA5Q96PV4 448 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 UBE2OQ9C0C9 1292 aaKnown RBP21.86■■□□□ 1.09
CLN3-225ENST00000566824 CDHR5Q9HBB8 845 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 CEP131Q9UPN4 1083 aa21.86■■□□□ 1.09
CLN3-225ENST00000566824 RSPH10B2B2RC85 870 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 DKC1O60832 514 aaKnown RBP eCLIP21.85■■□□□ 1.09
CLN3-225ENST00000566824 RSPH10BP0C881 870 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 TBC1D8BQ0IIM8 1120 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 XKR9Q5GH70 373 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 FAM26DQ5JW98 314 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 SPECC1Q5M775 1068 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 KCNK18Q7Z418 384 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 LINC00301Q8NCQ3 95 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 LRRC15Q8TF66 581 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 ZNF396Q96N95 335 aaPredicted RBP21.85■■□□□ 1.09
CLN3-225ENST00000566824 PPP1R16BQ96T49 567 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 PLIN2Q99541 437 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 CSRNP2Q9H175 543 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 SUGCTQ9HAC7 445 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 IL23AQ9NPF7 189 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 KIAA1024Q9UPX6 916 aa21.85■■□□□ 1.09
CLN3-225ENST00000566824 IGKV6-21A0A0C4DH24 114 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 MAFO75444 373 aaPredicted RBP21.84■■□□□ 1.09
CLN3-225ENST00000566824 VTNP04004 478 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 MRPS6P82932 125 aaKnown RBP21.84■■□□□ 1.09
CLN3-225ENST00000566824 GRB10Q13322 594 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 SHHQ15465 462 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 TMEM240Q5SV17 173 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 ZNF668Q96K58 619 aaPredicted RBP21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms