RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TRAPPC12Q8WVT3 735 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 PHKBQ93100 1093 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 C1orf112Q9NSG2 853 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 LRFN2Q9ULH4 789 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 CYP46A1Q9Y6A2 500 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 WDR64B1ANS9 1081 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 CPLX1O14810 134 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 RPS6KA5O75582 802 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 MYH9P35579 1960 aaKnown RBP16.88■□□□□ 0.29
CLN3-222ENST00000566083 TMEM62Q0P6H9 643 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 NLRC5Q86WI3 1866 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 KIAA0319LQ8IZA0 1049 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 NEK9Q8TD19 979 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 RIT2Q99578 217 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 SLC26A6Q9BXS9 759 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 TM6SF1Q9BZW5 370 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 ZSWIM6Q9HCJ5 1215 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 SAMM50Q9Y512 469 aa16.88■□□□□ 0.29
CLN3-222ENST00000566083 COL9A1P20849 921 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 TMOD1P28289 359 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 NLRP5P59047 1200 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 SSRP1Q08945 709 aaKnown RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 NFX1Q12986 1120 aaKnown RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 COL19A1Q14993 1142 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 TCEAL5Q5H9L2 206 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 GALNT17Q6IS24 598 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 CRIPAKQ8N1N5 446 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 ZNF274Q96GC6 653 aaPredicted RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 NRBP2Q9NSY0 501 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 GINS2Q9Y248 185 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 PCDHB7Q9Y5E2 793 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 SFNP31947 248 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 SARSP49591 514 aaKnown RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 CRYBB1P53674 252 aaPredicted RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 PTCRAQ6ISU1 281 aaPredicted RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 SLC24A5Q71RS6 500 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 RTN4RL1Q86UN2 441 aaPredicted RBP16.87■□□□□ 0.29
CLN3-222ENST00000566083 ZBTB10Q96DT7 871 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 MAP7D2Q96T17 732 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 AAASQ9NRG9 546 aa16.87■□□□□ 0.29
CLN3-222ENST00000566083 DENND3A2RUS2 1198 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 GRXCR2A6NFK2 248 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 DEXIO95424 95 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 C22orf31O95567 290 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 MMP1P03956 469 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 LINC00271P0C7V0 271 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 JAK3P52333 1124 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 CCT2P78371 535 aaKnown RBP16.86■□□□□ 0.29
CLN3-222ENST00000566083 FAM178BQ8IXR5 827 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 METTL13Q8N6R0 699 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 RDM1Q8NG50 284 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.86■□□□□ 0.29
CLN3-222ENST00000566083 LINC01599Q8WXQ3 324 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 ERVK-5Q9HDB9 667 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 DISC1Q9NRI5 854 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 VPS54Q9P1Q0 977 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 GABBR1Q9UBS5 961 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 PRKAG3Q9UGI9 489 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 PLAGL2Q9UPG8 496 aa16.86■□□□□ 0.29
CLN3-222ENST00000566083 EVPLQ92817 2033 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 ZBTB42B2RXF5 422 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 GAS7O60861 476 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 NEFLP07196 543 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 ATP4AP20648 1035 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 CDC42EP1Q00587 391 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 CSPP1Q1MSJ5 1256 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 GJD3Q8N144 294 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 RGS18Q9NS28 235 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 PCDHA4Q9UN74 947 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 ST3GAL5Q9UNP4 418 aa16.85■□□□□ 0.29
CLN3-222ENST00000566083 FSD2A1L4K1 749 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 GRM6O15303 877 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 CDKL5O76039 1030 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 MOXD1Q6UVY6 613 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 EP400NLQ6ZTU2 488 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 RASGRP4Q8TDF6 673 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 LENG9Q96B70 501 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 ADAM2Q99965 735 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 TEKT3Q9BXF9 490 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 TMX1Q9H3N1 280 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 ELAC1Q9H777 363 aaKnown RBP16.84■□□□□ 0.29
CLN3-222ENST00000566083 CLDND1Q9NY35 253 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 NOC2LQ9Y3T9 749 aaKnown RBP16.84■□□□□ 0.29
CLN3-222ENST00000566083 PCDHB12Q9Y5F1 795 aa16.84■□□□□ 0.29
CLN3-222ENST00000566083 MRPL42Q9Y6G3 142 aaKnown RBP16.84■□□□□ 0.29
CLN3-222ENST00000566083 REV3LO60673 3130 aa16.83■□□□□ 0.29
CLN3-222ENST00000566083 LOXHD1Q8IVV2 1947 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 MSH4O15457 936 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 HOXA2O43364 376 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 OATP04181 439 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 XBP1P17861 261 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 UBE3AQ05086 875 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 TOB2Q14106 344 aaPredicted RBP16.83■□□□□ 0.28
CLN3-222ENST00000566083 TMEM266Q2M3C6 531 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 Q4G0T1 1027 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 LRCH2Q5VUJ6 765 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 DAGLBQ8NCG7 672 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 TBCKQ8TEA7 893 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 SLC5A5Q92911 643 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 NCOA5Q9HCD5 579 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms