RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 STX6O43752 255 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 LGR5O75473 907 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 PSMD10O75832 226 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 STAT5BP51692 787 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 RILPL1Q5EBL4 403 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 BRAPQ7Z569 592 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 TMCO2Q7Z6W1 182 aaPredicted RBP19.4■□□□□ 0.7
CLN3-217ENST00000565354 FERMT3Q86UX7 667 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 CKAP2LQ8IYA6 745 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 TNPO1Q92973 898 aaKnown RBP19.4■□□□□ 0.7
CLN3-217ENST00000565354 UBE2ZQ9H832 354 aaPredicted RBP19.4■□□□□ 0.7
CLN3-217ENST00000565354 DISC1Q9NRI5 854 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 HDAC6Q9UBN7 1215 aa19.4■□□□□ 0.7
CLN3-217ENST00000565354 WNT7AO00755 349 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 ATG7O95352 703 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 SELPP16109 830 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 TXKP42681 527 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 DEFB103AP81534 67 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 GPNMBQ14956 572 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 SWSAP1Q6NVH7 229 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 PDXDC2PQ6P474 469 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 CNKSR3Q6P9H4 555 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 ABHD15Q6UXT9 468 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 CTAGE1Q96RT6 745 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 SUGCTQ9HAC7 445 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 GABBR1Q9UBS5 961 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 TRPC6Q9Y210 931 aa19.39■□□□□ 0.69
CLN3-217ENST00000565354 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.38■□□□□ 0.69
CLN3-217ENST00000565354 C17orf102A2RUQ5 167 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 PARNO95453 639 aaKnown RBP19.38■□□□□ 0.69
CLN3-217ENST00000565354 SMIM10L2AP0DMW4 78 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 SMIM10L2BP0DMW5 78 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 GNAT1P11488 350 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 PDIA4P13667 645 aaKnown RBP19.38■□□□□ 0.69
CLN3-217ENST00000565354 ERVK-21P61565 698 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 NBR1Q14596 966 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 NCAPH2Q6IBW4 605 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 PLPPR4Q7Z2D5 763 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 SESTD1Q86VW0 696 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 CCDC60Q8IWA6 550 aaPredicted RBP19.38■□□□□ 0.69
CLN3-217ENST00000565354 RDM1Q8NG50 284 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 HAS1Q92839 578 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 TGS1Q96RS0 853 aaKnown RBP19.38■□□□□ 0.69
CLN3-217ENST00000565354 RAD9AQ99638 391 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 GTF2IRD1Q9UHL9 959 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 MTUS1Q9ULD2 1270 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 PCDHA12Q9UN75 941 aa19.38■□□□□ 0.69
CLN3-217ENST00000565354 PRR33A8MZF0 331 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 GJB5O95377 273 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 CXCL10P02778 98 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 OR52Z1P0C646 297 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 SLC26A2P50443 739 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 PPP2R5CQ13362 524 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 LEXMQ3ZCV2 418 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 GDF6Q6KF10 455 aaPredicted RBP19.37■□□□□ 0.69
CLN3-217ENST00000565354 LRRC8DQ7L1W4 858 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 FAM178BQ8IXR5 827 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 GJD3Q8N144 294 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 PCYT2Q99447 389 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 TTC12Q9H892 705 aaPredicted RBP19.37■□□□□ 0.69
CLN3-217ENST00000565354 PCDHB6Q9Y5E3 794 aa19.37■□□□□ 0.69
CLN3-217ENST00000565354 IGKV6D-21A0A0A0MT36 114 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 ABHD14A-ACY1A0A1B0GW23 586 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 LINC01553A4QN01 128 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 TOB1P50616 345 aaPredicted RBP19.36■□□□□ 0.69
CLN3-217ENST00000565354 RBL2Q08999 1139 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 PPFIA1Q13136 1202 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 TMEM266Q2M3C6 531 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 TRMT1LQ7Z2T5 733 aaKnown RBP19.36■□□□□ 0.69
CLN3-217ENST00000565354 ALYREFQ86V81 257 aaKnown RBP19.36■□□□□ 0.69
CLN3-217ENST00000565354 DHX38Q92620 1227 aaKnown RBP19.36■□□□□ 0.69
CLN3-217ENST00000565354 ATP6V0A1Q93050 837 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 TMEM60Q9H2L4 133 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 RNPEPQ9H4A4 650 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 VAV3Q9UKW4 847 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 MTMR6Q9Y217 621 aa19.36■□□□□ 0.69
CLN3-217ENST00000565354 POTEB3A0JP26 581 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 NBNO60934 754 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 KCNA5P22460 613 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 IGBP1P78318 339 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 PLCB4Q15147 1175 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 POTEBQ6S5H4 581 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 MTMR9Q96QG7 549 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 ZSCAN16Q9H4T2 348 aaPredicted RBP19.35■□□□□ 0.69
CLN3-217ENST00000565354 SETD4Q9NVD3 440 aa19.35■□□□□ 0.69
CLN3-217ENST00000565354 DAXXQ9UER7 740 aaPredicted RBP19.35■□□□□ 0.69
CLN3-217ENST00000565354 MICAL3Q7RTP6 2002 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 NRCAMQ92823 1304 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 DKC1O60832 514 aaKnown RBP eCLIP19.34■□□□□ 0.69
CLN3-217ENST00000565354 EFCAB14O75071 495 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 CKBP12277 381 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 RESTQ13127 1097 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 PTGDRQ13258 359 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 EPHA7Q15375 998 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 GRIK4Q16099 956 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 TCTN1Q2MV58 587 aa19.34■□□□□ 0.69
CLN3-217ENST00000565354 FOXD4L5Q5VV16 416 aaPredicted RBP19.34■□□□□ 0.69
CLN3-217ENST00000565354 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.34■□□□□ 0.69
CLN3-217ENST00000565354 FOXD4L4Q8WXT5 416 aaPredicted RBP19.34■□□□□ 0.69
CLN3-217ENST00000565354 FAM167AQ96KS9 214 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms