RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CLCN5P51795 746 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 KCNC3Q14003 757 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 GRM4Q14833 912 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 SEC23AQ15436 765 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 SLC35G1Q2M3R5 365 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 CWC27Q6UX04 472 aaKnown RBP8.41□□□□□ -1.06
VPS4A-203ENST00000564399 RASGRP4Q8TDF6 673 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 TRAPPC12Q8WVT3 735 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 MRPS27Q92552 414 aaKnown RBP8.41□□□□□ -1.06
VPS4A-203ENST00000564399 GPRASP2Q96D09 838 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 ADAM2Q99965 735 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 ATP6V0A4Q9HBG4 840 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 NGRNQ9NPE2 291 aaKnown RBP8.41□□□□□ -1.06
VPS4A-203ENST00000564399 C1orf112Q9NSG2 853 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 DIAPH3Q9NSV4 1193 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 LIMD1Q9UGP4 676 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 LZTS1Q9Y250 596 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 PCDHA2Q9Y5H9 948 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 OTOGLQ3ZCN5 2332 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 MYH9P35579 1960 aaKnown RBP8.41□□□□□ -1.06
VPS4A-203ENST00000564399 CACNA1IQ9P0X4 2223 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 KDM3AQ9Y4C1 1321 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 MED19A0JLT2 244 aaPredicted RBP8.4□□□□□ -1.06
VPS4A-203ENST00000564399 ERICH2A1L162 156 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 CYTH3O43739 400 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 MGEA5O60502 916 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 RPS6KA5O75582 802 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 WEE2P0C1S8 567 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 FGFR1P11362 822 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 MTHFRP42898 656 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 PLCB3Q01970 1234 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 KRT17Q04695 432 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 ITIH3Q06033 890 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 TRDNQ13061 729 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 ODR4Q5SWX8 454 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 SLC24A5Q71RS6 500 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 CYB5R4Q7L1T6 521 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 DGLUCYQ7Z3D6 616 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 NME8Q8N427 588 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 TDRD5Q8NAT2 981 aaKnown RBP8.4□□□□□ -1.06
VPS4A-203ENST00000564399 TMEM87AQ8NBN3 555 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 ADAM7Q9H2U9 754 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 CWH43Q9H720 699 aa8.4□□□□□ -1.06
VPS4A-203ENST00000564399 DBR1Q9UK59 544 aaKnown RBP8.4□□□□□ -1.06
VPS4A-203ENST00000564399 NOC2LQ9Y3T9 749 aaKnown RBP8.4□□□□□ -1.06
VPS4A-203ENST00000564399 VPS13AQ96RL7 3174 aa8.4□□□□□ -1.07
VPS4A-203ENST00000564399 SMIM35A0A1B0GVV1 85 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 C9IYK1 514 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 STK25O00506 426 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 MEIS2O14770 477 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 IFIT3O14879 490 aaKnown RBP8.39□□□□□ -1.07
VPS4A-203ENST00000564399 GPR182O15218 404 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ITGB5P18084 799 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PDE4AP27815 886 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PPM1AP35813 382 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PBX3P40426 434 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 MTMR1Q13613 665 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PLCB4Q15147 1175 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ANGPT1Q15389 498 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ATAT1Q5SQI0 421 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 RARS2Q5T160 578 aaKnown RBP8.39□□□□□ -1.07
VPS4A-203ENST00000564399 MTHFD1LQ6UB35 978 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 KCNT2Q6UVM3 1135 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 FAM43BQ6ZT52 329 aaPredicted RBP8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ZDHHC14Q8IZN3 488 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ABI1Q8IZP0 508 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PLCD3Q8N3E9 789 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 RMDN1Q96DB5 314 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 RRP36Q96EU6 259 aaKnown RBP8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ZNF558Q96NG5 402 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PPP1R16BQ96T49 567 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PCYT2Q99447 389 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 DSCC1Q9BVC3 393 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ERVK-5Q9HDB9 667 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 JPH1Q9HDC5 661 aaPredicted RBP8.39□□□□□ -1.07
VPS4A-203ENST00000564399 RGS18Q9NS28 235 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 TMEM161AQ9NX61 479 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 SPG21Q9NZD8 308 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 SLC9A2Q9UBY0 812 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 FBXL21Q9UKT6 434 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 ST3GAL5Q9UNP4 418 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 HCFC2Q9Y5Z7 792 aa8.39□□□□□ -1.07
VPS4A-203ENST00000564399 PIK3CDO00329 1044 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 HOXA2O43364 376 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 PI15O43692 258 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 CLASP2O75122 1294 aaKnown RBP8.38□□□□□ -1.07
VPS4A-203ENST00000564399 AOC1P19801 751 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 RFX1P22670 979 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 KLRC1P26715 233 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 STAT5BP51692 787 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 SMC1AQ14683 1233 aaKnown RBP8.38□□□□□ -1.07
VPS4A-203ENST00000564399 BMS1Q14692 1282 aaKnown RBP8.38□□□□□ -1.07
VPS4A-203ENST00000564399 WTAPQ15007 396 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 CATIPQ7Z7H3 387 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 CCDC105Q8IYK2 499 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 KIAA2013Q8IYS2 634 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 C12orf76Q8N812 135 aaPredicted RBP8.38□□□□□ -1.07
VPS4A-203ENST00000564399 HINFPQ9BQA5 517 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 RTP3Q9BQQ7 232 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 LNPKQ9C0E8 428 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms