RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SIPA1L1O43166 1804 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 KLRF2D3W0D1 207 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 STXBP3O00186 592 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 ZNF263O14978 683 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 LUC7L3O95232 432 aaKnown RBP14.5□□□□□ -0.09
CLK3-206ENST00000562078 CYLC1P35663 651 aaPredicted RBP14.5□□□□□ -0.09
CLK3-206ENST00000562078 TRAPPC10P48553 1259 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 ALDH5A1P51649 535 aaPredicted RBP14.5□□□□□ -0.09
CLK3-206ENST00000562078 ARMC9Q7Z3E5 817 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 CCDC197Q8NCU1 140 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 PAGE5Q96GU1 130 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 TAOK3Q9H2K8 898 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 C2CD2Q9Y426 696 aa14.5□□□□□ -0.09
CLK3-206ENST00000562078 GREB1LQ9C091 1923 aaPredicted RBP14.49□□□□□ -0.09
CLK3-206ENST00000562078 MYH10P35580 1976 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 LGR5O75473 907 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 CRKP46108 304 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 PPP2R2AP63151 447 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 MXRA7P84157 204 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 MTA1Q13330 715 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 TAF11Q15544 211 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 NUGGCQ68CJ6 796 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 USP17L2Q6R6M4 530 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 NIM1KQ8IY84 436 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 RBM41Q96IZ5 413 aaKnown RBP14.49□□□□□ -0.09
CLK3-206ENST00000562078 SPON1Q9HCB6 807 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 HYOU1Q9Y4L1 999 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 RAD17O75943 681 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 PARP1P09874 1014 aaKnown RBP14.49□□□□□ -0.09
CLK3-206ENST00000562078 CCND1P24385 295 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 PAFAH1B1P43034 410 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 ZNF844Q08AG5 666 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 HHIPL2Q6UWX4 724 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 NLGN2Q8NFZ4 835 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 MDM1Q8TC05 714 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 NAF1Q96HR8 494 aaKnown RBP14.49□□□□□ -0.09
CLK3-206ENST00000562078 CAPN11Q9UMQ6 739 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 COL4A5P29400 1685 aa14.49□□□□□ -0.09
CLK3-206ENST00000562078 TACC1O75410 805 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 PAEPP09466 180 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 HSD17B3P37058 310 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 KCTD19Q17RG1 926 aaPredicted RBP14.48□□□□□ -0.09
CLK3-206ENST00000562078 CLEC10AQ8IUN9 316 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 MB21D1Q8N884 522 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 USP40Q9NVE5 1235 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 BARHL2Q9NY43 387 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 NOVA2Q9UNW9 492 aaKnown RBP14.48□□□□□ -0.09
CLK3-206ENST00000562078 MAPK8IP1Q9UQF2 711 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 CCDC194A0A1B0GVG4 234 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 CFAP73A6NFT4 308 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 RASSF10A6NK89 507 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 H0YGN5 161 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 ZSCAN9O15535 394 aaPredicted RBP14.48□□□□□ -0.09
CLK3-206ENST00000562078 GSTA1P08263 222 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 NQO1P15559 274 aaKnown RBP14.48□□□□□ -0.09
CLK3-206ENST00000562078 PRLRP16471 622 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 TCP1P17987 556 aaKnown RBP14.48□□□□□ -0.09
CLK3-206ENST00000562078 HSPA9P38646 679 aaKnown RBP14.48□□□□□ -0.09
CLK3-206ENST00000562078 SCNN1BP51168 640 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 MEA1Q16626 185 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 RRAGBQ5VZM2 374 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 CHMP6Q96FZ7 201 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 SPZ1Q9BXG8 430 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 VPS33BQ9H267 617 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 PLCB1Q9NQ66 1216 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 NFS1Q9Y697 457 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 ARFGEF1Q9Y6D6 1849 aa14.48□□□□□ -0.09
CLK3-206ENST00000562078 PLIN4Q96Q06 1357 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 M0R2N6 131 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 IMPDH2P12268 514 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 KLK7P49862 253 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 EIF6P56537 245 aaKnown RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 UAP1Q16222 522 aaPredicted RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 IL17AQ16552 155 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 ANO7Q6IWH7 933 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 ZFAND2BQ8WV99 257 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 LZTS2Q9BRK4 669 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 BLZF1Q9H2G9 400 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 GGT7Q9UJ14 662 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 ZNF232Q9UNY5 417 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 LRRD1A4D1F6 860 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 PLEKP08567 350 aaPredicted RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 AKR1B1P15121 316 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 ATP2A2P16615 1042 aaKnown RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 MAGEA8P43361 318 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 DNA2P51530 1060 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 MAGOHP61326 146 aaKnown RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 GABPAQ06546 454 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 LRRC47Q8N1G4 583 aaKnown RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 KIF2BQ8N4N8 673 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 ATL2Q8NHH9 583 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 WHAMMQ8TF30 809 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 MAGOHBQ96A72 148 aaKnown RBP14.47□□□□□ -0.09
CLK3-206ENST00000562078 KRT12Q99456 494 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 PCMTD2Q9NV79 361 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 PCDHA6Q9UN73 950 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 PCDHGA4Q9Y5G9 962 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 PCDHA8Q9Y5H6 950 aa14.47□□□□□ -0.09
CLK3-206ENST00000562078 USP17L5A8MUK1 530 aa14.46□□□□□ -0.09
CLK3-206ENST00000562078 PDHA1P08559 390 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 176 ms