RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ZNF862O60290 1169 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 PRPF40AO75400 957 aaKnown RBP10.29□□□□□ -0.76
LDLR-210ENST00000559340 SMIM10L2AP0DMW4 78 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SMIM10L2BP0DMW5 78 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 COL6A1P12109 1028 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 INSRRP14616 1297 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SYKP43405 635 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 DNM2P50570 870 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 FXR1P51114 621 aaKnown RBP eCLIP10.29□□□□□ -0.76
LDLR-210ENST00000559340 CDC42EP1Q00587 391 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 TBC1D8BQ0IIM8 1120 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 GRB10Q13322 594 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 KARSQ15046 597 aaKnown RBP10.29□□□□□ -0.76
LDLR-210ENST00000559340 GRIK4Q16099 956 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 UGCGQ16739 394 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 MTERF2Q49AM1 385 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 TMEM119Q4V9L6 283 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SPECC1Q5M775 1068 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 C1orf53Q5VUE5 145 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 KANK3Q6NY19 840 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SHC4Q6S5L8 630 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SLC39A5Q6ZMH5 540 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SV2BQ7L1I2 683 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 TRMT1LQ7Z2T5 733 aaKnown RBP10.29□□□□□ -0.76
LDLR-210ENST00000559340 RSPH3Q86UC2 560 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 TRIM50Q86XT4 487 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 CEP57L1Q8IYX8 460 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 FSIP1Q8NA03 581 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 SLC43A3Q8NBI5 491 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 TCP11Q8WWU5 503 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 HTATIP2Q9BUP3 242 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 TIPINQ9BVW5 301 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 CYP26B1Q9NR63 512 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 KCND2Q9NZV8 630 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 HDAC6Q9UBN7 1215 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 GTF2IRD1Q9UHL9 959 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 KCNG1Q9UIX4 513 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 HOOK1Q9UJC3 728 aaKnown RBP10.29□□□□□ -0.76
LDLR-210ENST00000559340 TELO2Q9Y4R8 837 aa10.29□□□□□ -0.76
LDLR-210ENST00000559340 FAM237AA0A1B0GTK4 181 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 POLR2DO15514 142 aaKnown RBP10.28□□□□□ -0.76
LDLR-210ENST00000559340 DGAT1O75907 488 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 PLCG1P19174 1290 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 ATP4AP20648 1035 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 MNX1P50219 401 aaPredicted RBP10.28□□□□□ -0.76
LDLR-210ENST00000559340 CDK7P50613 346 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 POLGP54098 1239 aaPredicted RBP10.28□□□□□ -0.76
LDLR-210ENST00000559340 PSMC6P62333 389 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 TAF2Q6P1X5 1199 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 POTEGQ6S5H5 508 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 ANO5Q75V66 913 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 NME8Q8N427 588 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 CCDC155Q8N6L0 562 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 SYT2Q8N9I0 419 aaPredicted RBP10.28□□□□□ -0.76
LDLR-210ENST00000559340 MCPH1Q8NEM0 835 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 PIGOQ8TEQ8 1089 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 SLC7A3Q8WY07 619 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 LARP4BQ92615 738 aaKnown RBP10.28□□□□□ -0.76
LDLR-210ENST00000559340 RAD54LQ92698 747 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 CHAMP1Q96JM3 812 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 TOX2Q96NM4 488 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 PNMA5Q96PV4 448 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 PANK2Q9BZ23 570 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 COLQQ9Y215 455 aaPredicted RBP10.28□□□□□ -0.76
LDLR-210ENST00000559340 PCDHA2Q9Y5H9 948 aa10.28□□□□□ -0.76
LDLR-210ENST00000559340 A0A1B0GVL5 298 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 ASAP2O43150 1006 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 MAFO75444 373 aaPredicted RBP10.27□□□□□ -0.77
LDLR-210ENST00000559340 STBD1O95210 358 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 SSBP05455 408 aaKnown RBP eCLIP10.27□□□□□ -0.77
LDLR-210ENST00000559340 KRT18P05783 430 aaKnown RBP10.27□□□□□ -0.77
LDLR-210ENST00000559340 PLA2G4BP0C869 781 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 PFKFB1P16118 471 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 KLRC1P26715 233 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 RARRES1P49788 294 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 IGBP1P78318 339 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 BFSP2Q13515 415 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 TARBP2Q15633 366 aaKnown RBP10.27□□□□□ -0.77
LDLR-210ENST00000559340 PTGISQ16647 500 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 TPRNQ4KMQ1 711 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 IER5Q5VY09 327 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 PADI6Q6TGC4 694 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 MTHFD1LQ6UB35 978 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 USP49Q70CQ1 688 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 PDILTQ8N807 584 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 CCDC47Q96A33 483 aaKnown RBP10.27□□□□□ -0.77
LDLR-210ENST00000559340 DHX58Q96C10 678 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 MAP7D2Q96T17 732 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 PLIN2Q99541 437 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 MTRQ99707 1265 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 BHMT2Q9H2M3 363 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 ATP6V0A4Q9HBG4 840 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 SETD4Q9NVD3 440 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 TUBE1Q9UJT0 475 aa10.27□□□□□ -0.77
LDLR-210ENST00000559340 SMIM35A0A1B0GVV1 85 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 MBLAC1A4D2B0 266 aaPredicted RBP10.26□□□□□ -0.77
LDLR-210ENST00000559340 E9PMD0 336 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 H0YGN5 161 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 M0QZ92 97 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 KINO60870 393 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms