RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 A0A087X0T9 212 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 PEX10O60683 326 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 FAM228BP0C875 321 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 MATR3P43243 847 aaKnown RBP eCLIP11.66□□□□□ -0.548e-13■■■□□ 19
CUX1-217ENST00000558836 TGFB2P61812 414 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 MAP3K10Q02779 954 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 WHAMMP3Q1A5X7 153 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 ASTE1Q2TB18 679 aaPredicted RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 NFRKBQ6P4R8 1299 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 MIER3Q7Z3K6 550 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 CAGE1Q8TC20 777 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 SYTL5Q8TDW5 730 aaPredicted RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 COG1Q8WTW3 980 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 ATG4CQ96DT6 458 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 GDAP1L1Q96MZ0 367 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 NACC1Q96RE7 527 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.66□□□□□ -0.548e-7■■■■■ 97
CUX1-217ENST00000558836 TYW1Q9NV66 732 aaKnown RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 CTDP1Q9Y5B0 961 aaPredicted RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 RGPD3A6NKT7 1758 aaPredicted RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 RGPD4Q7Z3J3 1758 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 TESPA1A2RU30 521 aaPredicted RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 POLR3GO15318 223 aaPredicted RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 USO1O60763 962 aaKnown RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 HIP1RO75146 1068 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 AFPP02771 609 aaKnown RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 HSD17B4P51659 736 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 MARSP56192 900 aaKnown RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 SP4Q02446 784 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 R3HDM1Q15032 1099 aaKnown RBP11.66□□□□□ -0.54
CUX1-217ENST00000558836 EHMT1Q9H9B1 1298 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 SLC38A10Q9HBR0 1119 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 ZMYM2Q9UBW7 1377 aa11.66□□□□□ -0.54
CUX1-217ENST00000558836 ARHGEF35A5YM69 484 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 WDR46O15213 610 aaKnown RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 DHX15O43143 795 aaKnown RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 TRIM49P0CI25 452 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 TRIM49CP0CI26 452 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 PON1P27169 355 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 KLHL30Q0D2K2 578 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 MTMR1Q13613 665 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 EXOC3L4Q17RC7 722 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 KCTD19Q17RG1 926 aaPredicted RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 LONRF2Q1L5Z9 754 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 TKFCQ3LXA3 575 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 ANGEL2Q5VTE6 544 aaKnown RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 PPP4R3CPQ6ZMV5 832 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 ZNF720Q7Z2F6 126 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 DAW1Q8N136 415 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 SLC35C1Q96A29 364 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 SPAG5Q96R06 1193 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 WRNIP1Q96S55 665 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 FIZ1Q96SL8 496 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 GANQ9H2C0 597 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 PCIF1Q9H4Z3 704 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 ABCB6Q9NP58 842 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 GPRC5CQ9NQ84 441 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 TELO2Q9Y4R8 837 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 ZHX2Q9Y6X8 837 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 PLA2G6O60733 806 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 EPB41P11171 864 aaKnown RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 UCHL3P15374 230 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 HMGCS2P54868 508 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 PTK2Q05397 1052 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 C2orf54Q08AI8 447 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 TNFAIP1Q13829 316 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 EPHA7Q15375 998 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 UGCGQ16739 394 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 PAPD7Q5XG87 772 aaKnown RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 PADI6Q6TGC4 694 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 FRMD5Q7Z6J6 570 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 ZC3H3Q8IXZ2 948 aaKnown RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 TRERF1Q96PN7 1200 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 RMDN3Q96TC7 470 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 GOLPH3Q9H4A6 298 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 FAM184BQ9ULE4 1060 aa11.65□□□□□ -0.54
CUX1-217ENST00000558836 PACSIN2Q9UNF0 486 aaPredicted RBP11.65□□□□□ -0.54
CUX1-217ENST00000558836 LRRN2O75325 713 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 ZSWIM2Q8NEG5 633 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 RBM46Q8TBY0 533 aaKnown RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 KIAA1683Q9H0B3 1180 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 PLEKHA4Q9H4M7 779 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 OLFML3Q9NRN5 406 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 FAM53CQ9NYF3 392 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 GCNT4Q9P109 453 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 SLC26A4O43511 780 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 CTNND1O60716 968 aaKnown RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 TACC1O75410 805 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 SERPING1P05155 500 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 RPL13P26373 211 aaKnown RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 KLRC1P26715 233 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 ZNF280AP59817 542 aaPredicted RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 RNASE9P60153 205 aaKnown RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 SETQ01105 290 aaPredicted RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 KLHDC7AQ5VTJ3 777 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 FOXR2Q6PJQ5 311 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 B3GNT9Q6UX72 402 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 FAM186BQ8IYM0 893 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 SYCP3Q8IZU3 236 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 EHBP1Q8NDI1 1231 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms