RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 MCTP2Q6DN12 878 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.18□□□□□ -0.94
TRAF3-205ENST00000558700 NIPA1Q7RTP0 329 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 SP7Q8TDD2 431 aaPredicted RBP9.18□□□□□ -0.94
TRAF3-205ENST00000558700 BRF1Q92994 677 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 PGBD1Q96JS3 809 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 UHRF1Q96T88 793 aaPredicted RBP9.18□□□□□ -0.94
TRAF3-205ENST00000558700 LMCD1Q9NZU5 365 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 TCEAL9Q9UHQ7 104 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 USTQ9Y2C2 406 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 TELO2Q9Y4R8 837 aa9.18□□□□□ -0.94
TRAF3-205ENST00000558700 V9GY48 417 aaPredicted RBP9.18□□□□□ -0.94
TRAF3-205ENST00000558700 MBLAC1A4D2B0 266 aaPredicted RBP9.17□□□□□ -0.94
TRAF3-205ENST00000558700 M0QZ92 97 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 LPXNO60711 386 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 CDC27P30260 824 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 ACTR2P61160 394 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 IGBP1P78318 339 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 MRPS6P82932 125 aaKnown RBP9.17□□□□□ -0.94
TRAF3-205ENST00000558700 SETQ01105 290 aaPredicted RBP9.17□□□□□ -0.94
TRAF3-205ENST00000558700 AKAP17AQ02040 695 aaKnown RBP9.17□□□□□ -0.94
TRAF3-205ENST00000558700 APOBRQ0VD83 1088 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 FAM160B1Q5W0V3 765 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 KRT40Q6A162 431 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 RUFY4Q6ZNE9 571 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 TSHZ1Q6ZSZ6 1077 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 Q6ZUG5 572 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 SPRED2Q7Z698 418 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 REXO1Q8N1G1 1221 aaKnown RBP9.17□□□□□ -0.94
TRAF3-205ENST00000558700 CCDC148Q8NFR7 591 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 KCNB2Q92953 911 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 SNX14Q9Y5W7 946 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 LOXHD1Q8IVV2 1947 aa9.17□□□□□ -0.94
TRAF3-205ENST00000558700 ADGRA3Q8IWK6 1321 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 MYH9P35579 1960 aaKnown RBP9.16□□□□□ -0.94
TRAF3-205ENST00000558700 C3orf80F5H4A9 247 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 MEIS1O00470 390 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 INSRRP14616 1297 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 RPS6KB1P23443 525 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 GNA11P29992 359 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 SLC26A2P50443 739 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 TFF2Q03403 129 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 MGAT3Q09327 533 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 KCNA1Q09470 495 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 ITGB3BPQ13352 177 aaPredicted RBP9.16□□□□□ -0.94
TRAF3-205ENST00000558700 LPIN1Q14693 890 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 TIGD5Q53EQ6 642 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 FBXO47Q5MNV8 452 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 IER5Q5VY09 327 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 JAKMIP3Q5VZ66 844 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 PLPPR4Q7Z2D5 763 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 PLA2G4DQ86XP0 818 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 BICD2Q8TD16 824 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 HLA-CQ95604 372 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 TOP1MTQ969P6 601 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 PCYT2Q99447 389 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 C17orf80Q9BSJ5 609 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 RNF26Q9BY78 433 aaPredicted RBP9.16□□□□□ -0.94
TRAF3-205ENST00000558700 ZMYND12Q9H0C1 365 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 SUGCTQ9HAC7 445 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 AGO4Q9HCK5 861 aaKnown RBP9.16□□□□□ -0.94
TRAF3-205ENST00000558700 C6orf50Q9HD87 102 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 TMEM260Q9NX78 707 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 RWDD3Q9Y3V2 267 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 TRPV2Q9Y5S1 764 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 CDY2AQ9Y6F7 541 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 SQORQ9Y6N5 450 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 KIAA1671Q9BY89 1806 aa9.16□□□□□ -0.94
TRAF3-205ENST00000558700 ATG2AQ2TAZ0 1938 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 WDR81Q562E7 1941 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 COL1A2P08123 1366 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.15□□□□□ -0.94
TRAF3-205ENST00000558700 POTEB3A0JP26 581 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 DDX39AO00148 427 aaKnown RBP9.15□□□□□ -0.94
TRAF3-205ENST00000558700 BACH1O14867 736 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 PRPF3O43395 683 aaKnown RBP9.15□□□□□ -0.94
TRAF3-205ENST00000558700 EPB41L2O43491 1005 aaKnown RBP9.15□□□□□ -0.94
TRAF3-205ENST00000558700 UPP2O95045 317 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 BRD1O95696 1058 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 CHRNA1P02708 482 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 NEFLP07196 543 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 ARP10275 920 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 CPA1P15085 419 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 ADD1P35611 737 aaKnown RBP9.15□□□□□ -0.94
TRAF3-205ENST00000558700 SOX11P35716 441 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 STAT5BP51692 787 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 PLCB4Q15147 1175 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 PTPROQ16827 1216 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 EPC2Q52LR7 807 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 MARCH8Q5T0T0 291 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 MIS18BP1Q6P0N0 1132 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 POTEBQ6S5H4 581 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 FBXL16Q8N461 479 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 CYP2W1Q8TAV3 490 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 DNAJB3Q8WWF6 145 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 AGXT2Q9BYV1 514 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 OSBPL7Q9BZF2 842 aa9.15□□□□□ -0.94
TRAF3-205ENST00000558700 FAM49AQ9H0Q0 323 aaPredicted RBP9.15□□□□□ -0.94
TRAF3-205ENST00000558700 TCF20Q9UGU0 1960 aaKnown RBP9.15□□□□□ -0.95
TRAF3-205ENST00000558700 TTC3P53804 2025 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms