RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 SPOUT1Q5T280 376 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 FAM102BQ5T8I3 360 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 ANKRD54Q6NXT1 300 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 LLGL2Q6P1M3 1020 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 ZBTB33Q86T24 672 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 CHD1LQ86WJ1 897 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 THNSL1Q8IYQ7 743 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 TMEM105Q8N8V8 129 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 CDHR1Q96JP9 859 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 RIPOR3Q96MK2 946 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 CDCA3Q99618 268 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 SMOC2Q9H3U7 446 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 CWH43Q9H720 699 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 JPH1Q9HDC5 661 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 PCDHB12Q9Y5F1 795 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 CACNA1IQ9P0X4 2223 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 SMIM35A0A1B0GVV1 85 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 ERICH2A1L162 156 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 FSD2A1L4K1 749 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 HIDE1A8MVS5 230 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 C9IYK1 514 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 BRD1O95696 1058 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 FGFR1P11362 822 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 NUCB1Q02818 461 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 PTH1RQ03431 593 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 MTHFD1LQ6UB35 978 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 TMEM184AQ6ZMB5 413 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 CATIPQ7Z7H3 387 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 ZNF654Q8IZM8 581 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 KREMEN2Q8NCW0 462 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 RRP36Q96EU6 259 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 ADAM2Q99965 735 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 TCF25Q9BQ70 676 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 IRF2BPLQ9H1B7 796 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 POMKQ9H5K3 350 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 CDHR5Q9HBB8 845 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 JADE2Q9NQC1 790 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 TYW1Q9NV66 732 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 TMEM260Q9NX78 707 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 SLC9A2Q9UBY0 812 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 GINS2Q9Y248 185 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 NOC2LQ9Y3T9 749 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 PCDHB7Q9Y5E2 793 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 DNAH14Q0VDD8 3507 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 DMXL1Q9Y485 3027 aa9.36□□□□□ -0.91
CCDC88C-214ENST00000557507 TDRD15B5MCY1 1934 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 MYH15Q9Y2K3 1946 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 hCG_1642624A0A1W2PR95 340 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 C2CD4DB7Z1M9 353 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 E7EWF7 191 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 DDAH1O94760 285 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 IGHDP01880 384 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 PDE4AP27815 886 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 PBX3P40426 434 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 NBL1P41271 181 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 ACTR2P61160 394 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 ITGB3BPQ13352 177 aaPredicted RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 COL9A3Q14050 684 aaPredicted RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 RALYLQ86SE5 291 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 MB21D2Q8IYB1 491 aaPredicted RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 CMTR1Q8N1G2 835 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 SRBD1Q8N5C6 995 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 CTCFLQ8NI51 663 aaPredicted RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 CYP2W1Q8TAV3 490 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 RASGRP4Q8TDF6 673 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 IGDCC4Q8TDY8 1250 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 MRPS27Q92552 414 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 PPP1R16BQ96T49 567 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 AZI2Q9H6S1 392 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 PSTPIP2Q9H939 334 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 LY9Q9HBG7 655 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 ENTPD7Q9NQZ7 604 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 TSHZ2Q9NRE2 1034 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 AAASQ9NRG9 546 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 RGS18Q9NS28 235 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 KCNH7Q9NS40 1196 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 RNF19AQ9NV58 838 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 SEC63Q9UGP8 760 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 ST3GAL5Q9UNP4 418 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 LZTS1Q9Y250 596 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 EPG5Q9HCE0 2579 aa9.35□□□□□ -0.91
CCDC88C-214ENST00000557507 DENND3A2RUS2 1198 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 SPDYE3A6NKU9 549 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 RPS6KA5O75582 802 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 WEE2P0C1S8 567 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 SRGAP2BP0DMP2 458 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 ARP10275 920 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 GSPT1P15170 499 aaKnown RBP9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 LAG3P18627 525 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 RXRAP19793 462 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 STAT5BP51692 787 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 NUBP1P53384 320 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 FOXK2Q01167 660 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 MTMR3Q13615 1198 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 SART3Q15020 963 aaKnown RBP9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 PDE12Q6L8Q7 609 aaKnown RBP9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 LRRC55Q6ZSA7 311 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 SLC24A5Q71RS6 500 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 PLPPR4Q7Z2D5 763 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 FRMD5Q7Z6J6 570 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms