RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 KCNV1Q6PIU1 500 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 FBXL6Q8N531 539 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 IL31RAQ8NI17 732 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 RPGRIP1Q96KN7 1286 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 C16orf70Q9BSU1 422 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 C11orf84Q9BUA3 381 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 SETD4Q9NVD3 440 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 PLA2G2EQ9NZK7 142 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 BARX2Q9UMQ3 279 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 TELO2Q9Y4R8 837 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 KLRF2D3W0D1 207 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 ZBTB5O15062 677 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 PPP1R11O60927 126 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-220ENST00000556486 PPFIA4O75335 1185 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 DNAJB1P25685 340 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 HOXA13P31271 388 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-220ENST00000556486 BMPR1AP36894 532 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 ADAM15Q13444 863 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 CAMK1Q14012 370 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 CELF3Q5SZQ8 465 aaKnown RBP11.57□□□□□ -0.56
SCFD1-220ENST00000556486 IFIT1BQ5T764 474 aaKnown RBP11.57□□□□□ -0.56
SCFD1-220ENST00000556486 RNF19BQ6ZMZ0 732 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 VSIG10LQ86VR7 867 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 TRIM50Q86XT4 487 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 STAG2Q8N3U4 1231 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 USB1Q9BQ65 265 aaKnown RBP11.57□□□□□ -0.56
SCFD1-220ENST00000556486 PDCD2LQ9BRP1 358 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 IL25Q9H293 177 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 RNPEPQ9H4A4 650 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 RIOX1Q9H6W3 641 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 CLEC1BQ9P126 229 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 MAD2L2Q9UI95 211 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 PLXNA4Q9HCM2 1894 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 ADGRA3Q8IWK6 1321 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 WDR87Q6ZQQ6 2873 aa11.57□□□□□ -0.56
SCFD1-220ENST00000556486 DCHS1Q96JQ0 3298 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 LGALS2P05162 132 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 GHRP10912 638 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 UBA1P22314 1058 aaKnown RBP11.56□□□□□ -0.56
SCFD1-220ENST00000556486 HOXC8P31273 242 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 NRIP1P48552 1158 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 SP4Q02446 784 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 BTG3Q14201 252 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-220ENST00000556486 PAN2Q504Q3 1202 aaKnown RBP11.56□□□□□ -0.56
SCFD1-220ENST00000556486 BLOC1S3Q6QNY0 202 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 BMP8AQ7Z5Y6 402 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 FAM200AQ8TCP9 573 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 MSLNLQ96KJ4 702 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 USP15Q9Y4E8 981 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-220ENST00000556486 PCDHA1Q9Y5I3 950 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 FRMPD4Q14CM0 1322 aa11.56□□□□□ -0.56
SCFD1-220ENST00000556486 LOC730098B7Z3J9 87 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 C5orf67F2Z3F1 127 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 H3BRB1 525 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 NCK2O43639 380 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 PPFIA3O75145 1194 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 GLP2RO95838 553 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 MMP1P03956 469 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 GSPT1P15170 499 aaKnown RBP11.55□□□□□ -0.56
SCFD1-220ENST00000556486 TROAPQ12815 778 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 GRM4Q14833 912 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 SLC35G1Q2M3R5 365 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 RUFY4Q6ZNE9 571 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 CYB5R4Q7L1T6 521 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 ASCL5Q7RTU5 278 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 EXOC6Q8TAG9 804 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 CLP1Q92989 425 aaKnown RBP11.55□□□□□ -0.56
SCFD1-220ENST00000556486 APOL5Q9BWW9 433 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 TUT1Q9H6E5 874 aaKnown RBP11.55□□□□□ -0.56
SCFD1-220ENST00000556486 MLXIPQ9HAP2 919 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 MAP10Q9P2G4 905 aa11.55□□□□□ -0.56
SCFD1-220ENST00000556486 TSR3Q9UJK0 312 aaKnown RBP11.55□□□□□ -0.56
SCFD1-220ENST00000556486 MRPL42Q9Y6G3 142 aaKnown RBP11.55□□□□□ -0.56
SCFD1-220ENST00000556486 PER2O15055 1255 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 CYTH3O43739 400 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 STAM2O75886 525 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 CHRNA1P02708 482 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 ITGB1P05556 798 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 CYP21A2P08686 494 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 AVPR2P30518 371 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 GATMP50440 423 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 ARHGAP4P98171 946 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 NCOA4Q13772 614 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 PGM5Q15124 567 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 TTC22Q5TAA0 569 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 UTP14CQ5TAP6 766 aaKnown RBP11.54□□□□□ -0.56
SCFD1-220ENST00000556486 DNAJC14Q6Y2X3 702 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-220ENST00000556486 SMRP1Q8NCR6 262 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 ZBTB10Q96DT7 871 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 ASIC4Q96FT7 647 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 MAP3K14Q99558 947 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 LMAN2LQ9H0V9 348 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 RC3H2Q9HBD1 1191 aaKnown RBP11.54□□□□□ -0.56
SCFD1-220ENST00000556486 PLAGL2Q9UPG8 496 aa11.54□□□□□ -0.56
SCFD1-220ENST00000556486 LOXHD1Q8IVV2 1947 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 PNMA6FA0A0J9YX94 578 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 NOP56O00567 594 aaKnown RBP11.53□□□□□ -0.56
SCFD1-220ENST00000556486 EYA4O95677 639 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 RB1P06400 928 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 ICAM3P32942 547 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms