RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 MICAL3Q7RTP6 2002 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 SLITRK3O94933 977 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 CHRNA1P02708 482 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 CTSHP09668 335 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 TECP42680 631 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 MGAT3Q09327 533 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 CTTNQ14247 550 aaKnown RBP15.94■□□□□ 0.14
SHMT2-217ENST00000555116 RASIP1Q5U651 963 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 ANO5Q75V66 913 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 C4orf19Q8IY42 314 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 OSBPL7Q9BZF2 842 aa15.94■□□□□ 0.14
SHMT2-217ENST00000555116 FAM49AQ9H0Q0 323 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-217ENST00000555116 SEPT9Q9UHD8 586 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-217ENST00000555116 PTPRSQ13332 1948 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 DDX11L8A8MPP1 907 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 STX6O43752 255 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 DKC1O60832 514 aaKnown RBP eCLIP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 FGBP02675 491 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 FXR2P51116 673 aaKnown RBP eCLIP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 CYP4A11Q02928 519 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 KIAA0319LQ8IZA0 1049 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 NEK9Q8TD19 979 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 HERVK_113Q902F9 699 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 LAD1O00515 517 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 MAGEB2O15479 319 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 RPLP2P05387 115 aaKnown RBP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 HSP90AA1P07900 732 aaKnown RBP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 PRPHP41219 470 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 MRPS6P82932 125 aaKnown RBP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 ATP2C1P98194 919 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 IL17AQ16552 155 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 LRIT3Q3SXY7 679 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 RSPH3Q86UC2 560 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 LINC01465Q8N7H1 131 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 SPRYD3Q8NCJ5 442 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 RNPC3Q96LT9 517 aaKnown RBP15.93■□□□□ 0.14
SHMT2-217ENST00000555116 ZSWIM4Q9H7M6 989 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 GBF1Q92538 1859 aa15.93■□□□□ 0.14
SHMT2-217ENST00000555116 LYPLA2O95372 231 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 SPATA31C1P0DKV0 1188 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 TCTN1Q2MV58 587 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 MTERF2Q49AM1 385 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 PLA2G4FQ68DD2 849 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 OTOP2Q7RTS6 562 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 TPH2Q8IWU9 490 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 NME8Q8N427 588 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 SH2D3AQ9BRG2 576 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 FTOQ9C0B1 505 aaKnown RBP eCLIP15.92■□□□□ 0.14
SHMT2-217ENST00000555116 CDY2AQ9Y6F7 541 aa15.92■□□□□ 0.14
SHMT2-217ENST00000555116 ZBTB39O15060 712 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 TMEM266Q2M3C6 531 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 CXXC1Q9P0U4 656 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-217ENST00000555116 SOX1O00570 391 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-217ENST00000555116 MED24O75448 989 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 YWHABP31946 246 aaKnown RBP15.91■□□□□ 0.14
SHMT2-217ENST00000555116 NPEPPSP55786 919 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 TMEM62Q0P6H9 643 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 PDIA5Q14554 519 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 PLEKHG4Q58EX7 1191 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 EFCAB12Q6NXP0 572 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 METTL13Q8N6R0 699 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 IGSF22Q8N9C0 903 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 ZNF579Q8NAF0 562 aaKnown RBP15.91■□□□□ 0.14
SHMT2-217ENST00000555116 POLR3CQ9BUI4 534 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-217ENST00000555116 TUFT1Q9NNX1 390 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 CYP26B1Q9NR63 512 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 TRPV2Q9Y5S1 764 aa15.91■□□□□ 0.14
SHMT2-217ENST00000555116 KDM3AQ9Y4C1 1321 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 IGKV6-21A0A0C4DH24 114 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 CLCN3P51790 818 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 TBC1D8BQ0IIM8 1120 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 IER5Q5VY09 327 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 FAM173BQ6P4H8 233 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 CNKSR3Q6P9H4 555 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 CATSPER3Q86XQ3 398 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 LRRC71Q8N4P6 559 aa15.9■□□□□ 0.14
SHMT2-217ENST00000555116 MAFO75444 373 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-217ENST00000555116 ACTN1P12814 892 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 FXR1P51114 621 aaKnown RBP eCLIP15.89■□□□□ 0.13
SHMT2-217ENST00000555116 MKRN4PQ13434 485 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-217ENST00000555116 LPIN1Q14693 890 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 FBXO47Q5MNV8 452 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 ARL6IP4Q66PJ3 421 aaKnown RBP15.89■□□□□ 0.13
SHMT2-217ENST00000555116 DTHD1Q6ZMT9 781 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 OTUD6AQ7L8S5 288 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 CELF4Q9BZC1 486 aaKnown RBP15.89■□□□□ 0.13
SHMT2-217ENST00000555116 ZSCAN16Q9H4T2 348 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-217ENST00000555116 LRWD1Q9UFC0 647 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 PPME1Q9Y570 386 aa15.89■□□□□ 0.13
SHMT2-217ENST00000555116 RPA1P27694 616 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 SF3A1Q15459 793 aaKnown RBP15.88■□□□□ 0.13
SHMT2-217ENST00000555116 DBF4BQ8NFT6 615 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 ERMNQ8TAM6 284 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 CEP170P1Q96L14 293 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 MTIF3Q9H2K0 278 aaKnown RBP15.88■□□□□ 0.13
SHMT2-217ENST00000555116 SUGCTQ9HAC7 445 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 CDHR5Q9HBB8 845 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 ANKEF1Q9NU02 776 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 A0A087WWV3 80 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 PP2D1A8MPX8 630 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms